granges2ids: Extract matching transcript and gene IDs from a GRanges...
In bartongroup/RATS: Relative Abundance of Transcripts
granges2ids R Documentation
Extract matching transcript and gene IDs from a GRanges object.
Description
The GRanges must have at least the following metadata columns: 'gene_id' and 'transcript_id' (such as GRanges imported from GTF).
GFF3-style metadata columns are currently not supported.
Usage
granges2ids(annot, transc_header = "target_id", gene_header = "parent_id")
Arguments
annot
A GRanges object with gene_id and transcript_id metadata columns.
transc_header
The title for the transcripts column in the output. (target_id)
gene_header
The title for the genes column in the output. (parent_id)
Value
A data.table with two columns, matching transcript IDs to gene IDs.
bartongroup/RATS documentation built on June 8, 2022, 12:40 a.m.
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| granges2ids | R Documentation |
Extract matching transcript and gene IDs from a GRanges object.
Description
The GRanges must have at least the following metadata columns: 'gene_id' and 'transcript_id' (such as GRanges imported from GTF). GFF3-style metadata columns are currently not supported.
Usage
granges2ids(annot, transc_header = "target_id", gene_header = "parent_id")
Arguments
annot |
A GRanges object with gene_id and transcript_id metadata columns. |
transc_header |
The title for the transcripts column in the output. (target_id) |
gene_header |
The title for the genes column in the output. (parent_id) |
Value
A data.table with two columns, matching transcript IDs to gene IDs.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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