tidy_annot | R Documentation |
With the general english meaning of the word "tidy", not the R Tidyverse meaning.
tidy_annot(annot, TARGET_COL = "target_id", PARENT_COL = "parent_id")
annot |
A data.frame matching transcript identifiers to gene identifiers. Any additional columns are allowed but ignored. |
TARGET_COL |
The name of the column for the transcript identifiers in |
PARENT_COL |
The name of the column for the gene identifiers in |
A data.table with genes under parent_id
and transcripts under target_id
, regardless of what the input annotation named them. Rows ordered first by gene and then by transcript.
Extract the relevant columns as a data.table
and order the rows by gene. This creates a fast
look-up structure that is consistent throughout RATs.
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