gtf2ids: Extract matching transcript and gene IDs from a GTF file.
In bartongroup/RATS: Relative Abundance of Transcripts
gtf2ids R Documentation
Extract matching transcript and gene IDs from a GTF file.
Description
Previously named annot2ids(). The old name will be discontinued.
Usage
gtf2ids(annotfile, transc_header = "target_id", gene_header = "parent_id")
Arguments
annotfile
A GTF file.
transc_header
The title for the transcripts column in the output. (target_id)
gene_header
The title for the genes column in the output. (parent_id)
Details
GFF3 not supported.
Value
A data.table with two columns, matching transcript IDs to gene IDs.
bartongroup/RATS documentation built on June 8, 2022, 12:40 a.m.
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| gtf2ids | R Documentation |
Extract matching transcript and gene IDs from a GTF file.
Description
Previously named annot2ids(). The old name will be discontinued.
Usage
gtf2ids(annotfile, transc_header = "target_id", gene_header = "parent_id")
Arguments
annotfile |
A GTF file. |
transc_header |
The title for the transcripts column in the output. (target_id) |
gene_header |
The title for the genes column in the output. (parent_id) |
Details
GFF3 not supported.
Value
A data.table with two columns, matching transcript IDs to gene IDs.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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