plot_overview: Plot DTU results overview.

In bartongroup/RATS: Relative Abundance of Transcripts

Plot DTU results overview.

Description

Plot DTU results overview.

Usage

plot_overview(dtuo, type = "volcano")

Arguments

dtuo

A DTU object.

type

Type of plot. "tvolcano" - Change in proportion VS. transcript-level statistical significance. (Default) "gvolcano" - Largest change in proportion per gene VS. gene-level statistical significance. "maxdprop" - Distribution of biggest change in proportion in each gene. "dprop" - Distribution of effect size. "reprod" - Distribution of gene-level DTU reproducibility. "reprodVSdprop" - Transcript-level quantification reproducibility VS effect size. "fcvolcano" - Fold-change in abundance VS. statistical significance. Done at the transcript level. "fcVSdprop" - Fold-change of abundance VS difference in proportion, ofr each transcript.

Value

A ggplot2 object. Simply display it or you can also customize it.

CAUTION: RATs does NOT normalise the input abundances for fold-change calclulations. RATs is NOT intended for study of DTE.

These overviews rely on the results of the transcript-level proportion tests. If your DTU object was created without the transcript-level tests, this function will not work.

bartongroup/RATS documentation built on June 8, 2022, 12:40 a.m.