API for bedapub/ribiosExpression
Expression Analysis with RibiosExpression

Global functions
.contrastSampleIndices	Source code
DesignContrast	Man page Source code
DesignContrast-class	Man page
annotate	Man page
assertFullRank	Man page Source code
assert_is_range	Source code
avgReplicates	Man page Source code
contrastAnnotation	Man page
contrastAnnotation,DesignContrast-method	Man page
contrastAnnotation<-	Man page
contrastAnnotation<-,DesignContrast-method	Man page
contrastMatrix	Man page
contrastMatrix,DesignContrast-method	Man page
contrastMatrix,MArrayLM-method	Man page
contrastMatrix<-	Man page
contrastMatrix<-,DesignContrast-method	Man page
contrastNames	Man page
contrastNames,DesignContrast-method	Man page
contrastNames,MArrayLM-method	Man page
contrastSampleIndices	Man page
contrastSampleIndices,DesignContrast,character-method	Man page
contrastSampleIndices,DesignContrast,numeric-method	Man page
dataFrameTwoVecs	Man page Source code
design2group	Man page Source code
designMatrix	Man page
designMatrix,DesignContrast-method	Man page
designMatrix,MArrayLM-method	Man page
designMatrix<-	Man page
designMatrix<-,DesignContrast-method	Man page
designVariables	Man page
designVariables,DesignContrast-method	Man page
dispGroups	Man page
dispGroups,DesignContrast-method	Man page
eSetToLongTable	Man page Source code
eset2cls	Man page Source code
eset2gct	Man page Source code
exprsToLong	Man page
exprsToLong,eSet-method	Man page
exprsToLong,matrix-method	Man page
exprsToLong-eSet-method	Man page
exprsToLong-matrix-method	Man page
fixDesignMatrixColnames	Man page Source code
fixEmptyColumnName	Man page Source code
formatGmt	Man page
formatGmt,character,character,character-method	Man page
formatGmt,character,character,list-method	Man page
formatGmt,character,missing,character-method	Man page
formatGmt,character,missing,list-method	Man page
getDfCol	Source code
groups	Man page
groups,DesignContrast-method	Man page
grp2gmt	Man page Source code
grpFiles2gmt	Man page Source code
isInputDesignConsistent	Man page Source code
keepHighestVarProbe	Source code
keepMaxStatProbe	Man page Source code
limmaDgeTable	Man page Source code
limmaTopTable2dgeTable	Man page Source code
matrixToLongTable	Man page Source code
medianReplicates	Man page Source code
mergeEset	Man page Source code
nContrast	Man page
nContrast,DesignContrast-method	Man page
parseContrastStr	Man page Source code
parseDesignContrast	Man page Source code
parseDesignContrastFile	Man page Source code
parseDesignContrastStr	Man page Source code
plainFile2ConcString	Source code
plot.DesignContrast	Man page
poolReplicates	Man page Source code
rankByCol	Source code
readAnnotationFile	Man page Source code
readEset	Man page Source code
readExprsMatrix	Man page Source code
readFKtable	Man page Source code
readFeatureAnnotationFile	Man page Source code
readGct	Man page Source code
readGctCls	Man page Source code
readSampleAnnotationFile	Man page Source code
read_cls	Man page
reannotate	Man page
reannotate,eSet,logical-method	Man page
reannotate,eSet,missing-method	Man page
remainHighestVarProbe	Source code
removeAllZeroVar	Man page Source code
removeAllZeroVar.DesignContrast	Man page Source code
removeAllZeroVar.matrix	Man page Source code
removeColRank	Man page Source code
ribios.ExpressionSet	Man page
ribiosExpression	Man page
ribiosExpression-package	Man page
ribiosExpressionSet	Man page
rowscale.ExpressionSet	Man page Source code
show,DesignContrast-method	Man page
sniffFeatureType	Man page Source code
splitPCA	Man page Source code
summarizeProbesets	Man page Source code
summarizeSamples	Man page Source code
truncateDgeTable	Man page Source code
vectorizeExprs	Source code
writeCls	Man page Source code
writeEset	Man page Source code
writeGct	Man page
writeGct,eSet,ANY,ANY,ANY-method	Man page
writeGct,eSet-method	Man page
writeGct,matrix,ANY,ANY,ANY-method	Man page
writeGct,matrix-method	Man page
writeGctCls	Man page Source code
writeSampleGroups	Man page Source code
writeVarMetadata	Man page Source code
writeVarMetadata.default	Man page Source code