API for belleau/aicsPaper
Accurate Inference of Genetic Ancestry from Cancer Sequencing
| Global functions | |
|---|---|
| RAIDS | Man page |
| RAIDS-package | Man page |
| add1KG2SampleGDS | Man page Source code |
| addBlockFromPlink2GDS | Man page Source code |
| addGDS1KGLDBlock | Man page Source code |
| addGDSRef | Man page Source code |
| addGDSStudyPruning | Man page Source code |
| addPhase1KG2SampleGDSFromFile | Man page Source code |
| addPhase1KG2SampleGDSFromGDS | Man page Source code |
| addRef2GDS1KG | Man page Source code |
| addStudy1Kg | Man page Source code |
| addStudyGDSSample | Man page Source code |
| addUpdateLap | Man page Source code |
| addUpdateSegment | Man page Source code |
| appendGDSSample | Man page Source code |
| appendGDSSampleOnly | Man page Source code |
| appendGDSgenotype | Man page Source code |
| appendGDSgenotypeMat | Man page Source code |
| appendStudy2GDS1KG | Man page Source code |
| basePCASample | Man page Source code |
| computeAlleleFraction | Man page Source code |
| computeAllelicFractionDNA | Man page Source code |
| computeAllelicImbDNAChr | Man page Source code |
| computeKNNSuperPoprSynthetic | Man page Source code |
| computeLOHBlocksDNAChr | Man page Source code |
| computePCAForSamples | Man page Source code |
| computePCAsynthetic | Man page Source code |
| computePrunedPCARef | Man page Source code |
| computeSyntheticConfMat | Man page Source code |
| computeSyntheticROC | Man page Source code |
| estimateAllelicFraction | Man page Source code |
| gds2tfam | Man page Source code |
| gds2tfamSample | Man page Source code |
| gds2tped | Man page Source code |
| generateGDS1KG | Man page Source code |
| generateGDS1KGgenotypeFromSNPPileup | Man page Source code |
| generateGDSSNPinfo | Man page Source code |
| generateGDSSample | Man page Source code |
| generateGDSgenotype | Man page Source code |
| generateMapSnvSel | Man page Source code |
| generatePhase1KG2GDS | Man page Source code |
| getTableSNV | Man page Source code |
| groupChr1KGSNV | Man page Source code |
| groupChrPruning | Man page Source code |
| identifyRelative | Man page Source code |
| prepPed1KG | Man page Source code |
| prepPedSynthetic1KG | Man page Source code |
| prepSynthetic | Man page Source code |
| processBlockChr | Man page Source code |
| projectSample2PCA | Man page Source code |
| pruning1KG.Chr | Man page Source code |
| pruningSample | Man page Source code |
| runIBDKING | Man page Source code |
| runLDPruning | Man page Source code |
| selParaPCAUpQuartile | Man page Source code |
| select1KGPop | Man page Source code |
| snvListVCF | Man page Source code |
| syntheticGeno | Man page Source code |
| testAlleleFractionChange | Man page Source code |
| testEmptyBox | Man page Source code |
