Man pages for benabidlina/HLAfix
HLA Analysis Pipeline for large-scale Association Studies
| allele_dose | Count HLA allele (allele dose) of interest and display their... |
| firstQC | Do a standardised quality control, it cleans your data by... |
| hlaAlleleAnalysis | Analysis of HLA allele and many variate phenotypes |
| hlaAminoAcidAnalysis | HLA Amino-acids analysis with multiple |
| hlaCexpressionAnalysis | HLA-C expression analys many variate phenotypes |
| hlaHaplotypeAnalysis | Analysis of HLA haplotypes and many phenotypes |
| hlaImputation | Impute HLA allele by using HiBAG package |
| hlaKIRAnalysis | HLA KIR ligand analysis with multiple phenotypes or in... |
| plink2vcf | Check and fix strand, check reference alleles and remove... |
| popStrat | Checking for population stratification in order to adjust and... |
| pvalueCorrection | Function that correct P value for alleles or haplotypes or... |
