Description Usage Arguments Value
Take a file containing 14 colunms as input subjectID Disease PC1 PC2 A A B B C C DRB1 DRB1 DQB1 DQB1 ("," separator between fields) AND a file with differents phenotypes : subjectID traitName1 traitName2 traitName3 traitName4 traitName5
1 2 | hlaAlleleAnalysis(dataPath, phenoPath = NULL, covarPath = NULL,
outputFolder, outputFile, type = "pheno")
|
dataPath |
Hla allele file pathways. Contains with columns: subjectID Disease PC1 PC2 A A B B C C DRB1 DRB1 DQB1 DQB1. |
phenoPath |
phenotypes file with different trait names in columns |
covarPath |
must contains SubjectID followed by covariables |
outputFolder |
folder where to save the result |
outputFile |
Name for the result csv file |
type |
etiher "disease" for analysis in case/control or "pheno" for analysis with an quantitative phenotype |
Linear Regression result with the phenotypes as covariates
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