Description Usage Arguments Value
HLA KIR ligand analysis with multiple phenotypes or in case/control
1 2 | hlaKIRAnalysis(datapath, phenoPath = NULL, statut, pcaPath = NULL,
covarPath = NULL, outputFolder, outputFile, type = "pheno")
|
datapath |
File from Easy-HLA |
phenoPath |
phenotypes file with different trait names in columns |
statut |
file conaining subject ID and Disease statut |
pcaPath |
pca result for PC1 and PC2 |
covarPath |
must contains SubjectID followed by covariables |
outputFolder |
Folder's pathways where to save the result file |
outputFile |
Name of the result file |
type |
etiher "disease" for analysis in case/control or "pheno" for analysis with an quantitative phenotype |
Regression result in a file with columns: Amino_Acid Frequency Frequency_control Frequency_case N P_allelic OR_allelic lower_95
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