Description Usage Arguments Value
Analysis of HLA haplotypes and many phenotypes
1 2 3 | hlaHaplotypeAnalysis(haploDataPath, statut, phenoPath = NULL,
pcaPath = NULL, covarPath = NULL, outputFolder, outputFile,
type = "pheno")
|
haploDataPath |
Hla haplotypes file pathways |
statut |
file conaining subject ID and Disease statut |
phenoPath |
phenotypes file with different trait names in columns |
pcaPath |
pca result for PC1 and PC2 |
covarPath |
must contains SubjectID followed by covariables |
outputFolder |
folder where to save the result |
outputFile |
Name for the result csv file with columns: subjectID Disease PC1 PC2 A A B B C C DRB1 DRB1 DQB1 DQB1 |
type |
etiher "disease" for analysis in case/control or "pheno" for analysis with an quantitative phenotype |
Linear Regression result with the phenotypes as covariates
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