hlaAminoAcidAnalysis: HLA Amino-acids analysis with multiple

In benabidlina/HLAfix: HLA Analysis Pipeline for large-scale Association Studies

Description

HLA Amino-acids analysis with multiple

Usage

hlaAminoAcidAnalysis(aminoAcidFile, phenoPath = NULL, statut,
  pcaPath = NULL, covarPath = NULL, outputFolder, outputFile,
  type = "pheno")

Arguments

aminoAcidFile	File from Easy-HLA
phenoPath	phenotypes file with different trait names in columns
statut	file conaining subject ID and Disease statut
pcaPath	pca result for PC1 and PC2
covarPath	must contains SubjectID followed by covariables
outputFolder	Folder's pathways where to save the result file
outputFile	Name of the result file
type	etiher "disease" for analysis in case/control or "pheno" for analysis with an quantitative phenotype

Value

Regression result in a file with columns: Amino_Acid Frequency Frequency_control Frequency_case N P_allelic OR_allelic lower_95

benabidlina/HLAfix documentation built on Aug. 20, 2021, 11:53 p.m.