popStrat: Checking for population stratification in order to adjust and...
In benabidlina/HLAfix: HLA Analysis Pipeline for large-scale Association Studies
Description
Usage
Arguments
Value
Description
Checking for population stratification in order to adjust and get homogenous sample
Usage
1
popStrat(bedFile, bimFile, famFile, workingFolder)
Arguments
bedFile
.bed file containing the packed binary SNP genotype data
bimFile
.bim file containingthe SNP descriptions
famFile
.fam file containing subject (and, possibly, family) identifiers. This is basically a tab-delimited "pedfile"
workingFolder
folder where to save the result
Value
Return a plot sample's individuals ancestry with 3 references populations: European (CEU) , East-Asian (CHB) and African (YRI)
benabidlina/HLAfix documentation built on Aug. 20, 2021, 11:53 p.m.
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Description Usage Arguments Value
Description
Checking for population stratification in order to adjust and get homogenous sample
Usage
1 | popStrat(bedFile, bimFile, famFile, workingFolder)
|
Arguments
bedFile |
.bed file containing the packed binary SNP genotype data |
bimFile |
.bim file containingthe SNP descriptions |
famFile |
.fam file containing subject (and, possibly, family) identifiers. This is basically a tab-delimited "pedfile" |
workingFolder |
folder where to save the result |
Value
Return a plot sample's individuals ancestry with 3 references populations: European (CEU) , East-Asian (CHB) and African (YRI)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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