benja0x40/Tightrope
ChIP-seq normalization according to background reads density

Package index
Search the benja0x40/Tightrope package
Vignettes
Functions
103
Source code
25
Man pages
54
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benja0x40/Tightrope: ChIP-seq normalization according to background reads density
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API

API for benja0x40/Tightrope
ChIP-seq normalization according to background reads density

Global functions
.onAttach Source code
.onDetach Source code
AddByRow Man page Source code
BRD Man page Source code
BackgroundCandidates Man page Source code
BuildGeneFeatures Man page Source code
BuildSeqInfo Man page Source code
CDaDaDR.2D Man page Source code
CGI_hg38 Man page
CGI_mm10 Man page
CleanupGRanges Man page Source code
ClonalArg Man page Source code
ConsensusGRanges Man page Source code
CoveredLength Man page Source code
DefaultArgs Man page Source code
DefaultOptions Man page Source code
DefineSimulation Man page Source code
DetectCounts Man page Source code
DitherCounts Man page Source code
EGA91_human Man page
EGA91_mouse Man page
FlatGRanges Man page Source code
GenomicCoverage Man page Source code
GenomicTiling Man page Source code
ImportCpGIslandExt Man page
ImportGenomicRanges Man page Source code
ImportLiftOverChain Man page Source code
MakeSimulation Man page Source code
MulByRow Man page Source code
NSC_K27M Man page
NonZeroCounts Man page Source code
NormalizeCountMatrix Man page Source code
PlotBRD Man page Source code
PlotCountDistributions Man page Source code
RandomCounts Man page Source code
ReadCountMatrix Man page Source code
RemoveInputBias Source code
RemoveOptions Man page Source code
ResetOptions Man page Source code
ScalingFactors Man page Source code
Tightrope Man page Source code
VectorArgs Man page Source code
bg_ranking Man page Source code
df2grg Man page Source code
hg38_blacklist Man page
m2v Man page Source code
mm10_blacklist Man page
mv_emloop Man page Source code
mv_expectation Man page Source code
mv_gmm Man page Source code
mv_init_param Man page Source code
mv_maximization Man page Source code
mv_mle Man page Source code
mv_pdf Man page Source code
mv_rsg Man page Source code
v2m Man page Source code
xy2md Man page Source code
benja0x40/Tightrope documentation built on May 24, 2019, 1:35 a.m.

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