DetectCounts: DetectCounts

In benja0x40/Tightrope: ChIP-seq normalization according to background reads density

Description

DetectCounts

Usage

DetectCounts(cnt, detailed = FALSE)

Arguments

cnt	matrix of read counts (rows = observations, columns = measurement conditions).
detailed	logical, if TRUE return min and max read counts in each interval

Value

DetectCounts returns a data.frame with the following columns:

all	logical vector indicating rows of the cnt matrix with at least one count in all columns
none	logical vector indicating rows of the cnt matrix with no counts in all columns
nbr	integer vector representing the number of columns with at least one counts for each row of the cnt matrix

If detailed is equal to TRUE, the returned data.frame also includes the following columns:

min	integer vector representing the maximum count value for each row of the cnt matrix
max	integer vector representing the minimum count value for each row of the cnt matrix

See Also

NonZeroCounts, ReadCountMatrix

benja0x40/Tightrope documentation built on May 24, 2019, 1:35 a.m.