Files in benja0x40/Tightrope
ChIP-seq normalization according to background reads density

.Rbuildignore
.travis.yml
DESCRIPTION
LICENSE
NAMESPACE
R/BRD_V3.R R/BuildGeneFeatures.R R/CDaDaDR_2D.R R/GenomicRanges.R R/PlotBRD_V3.R R/ReadCountMatrix.R R/Tightrope.R R/UCSC.R R/mv_gmm.R R/z_arguments.R R/z_counts.R R/z_data.R R/z_matrixes.R R/z_simulation.R R/zzz.R README.md
codecov.yml
data/CGI_hg38.rda
data/CGI_mm10.rda
data/EGA91_human.rda
data/EGA91_mouse.rda
data/NSC_K27M.rda
data/hg38_blacklist.rda
data/mm10_blacklist.rda
inst/doc/Annotations.R inst/doc/Annotations.Rmd
inst/doc/Annotations.html
inst/doc/BRD.R inst/doc/BRD.Rmd
inst/doc/BRD.html
man/AddByRow.Rd man/BRD.Rd man/BackgroundCandidates.Rd man/BuildGeneFeatures.Rd man/BuildSeqInfo.Rd man/CDaDaDR.2D.Rd man/CGI_hg38.Rd man/CGI_mm10.Rd man/CleanupGRanges.Rd man/ClonalArg.Rd man/ConsensusGRanges.Rd man/CoveredLength.Rd man/DefaultArgs.Rd man/DefaultOptions.Rd man/DefineSimulation.Rd man/DetectCounts.Rd man/DitherCounts.Rd man/EGA91_human.Rd man/EGA91_mouse.Rd man/FlatGRanges.Rd man/GenomicCoverage.Rd man/GenomicTiling.Rd man/ImportCpGIslandExt.Rd man/ImportGenomicRanges.Rd man/ImportLiftOverChain.Rd man/MakeSimulation.Rd man/MulByRow.Rd man/NSC_K27M.Rd man/NonZeroCounts.Rd man/NormalizeCountMatrix.Rd man/PlotBRD.Rd man/PlotCountDistributions.Rd man/RandomCounts.Rd man/ReadCountMatrix.Rd man/RemoveOptions.Rd man/ResetOptions.Rd man/ScalingFactors.Rd man/Tightrope.Rd man/VectorArgs.Rd man/bg_ranking.Rd man/df2grg.Rd man/hg38_blacklist.Rd man/m2v.Rd man/mm10_blacklist.Rd man/mv_emloop.Rd man/mv_expectation.Rd man/mv_gmm.Rd man/mv_init_param.Rd man/mv_maximization.Rd man/mv_mle.Rd man/mv_pdf.Rd man/mv_rsg.Rd man/v2m.Rd man/xy2md.Rd tests/testthat.R tests/testthat/test_GenomicRanges.R tests/testthat/test_Tightrope.R tests/testthat/test_UCSC.R tests/testthat/test_z_arguments.R tests/testthat/test_z_counts.R tests/testthat/test_z_matrixes.R tests/testthat/test_z_simulation.R vignettes/Annotations.Rmd vignettes/BRD.Rmd
vignettes/images/Algorithm.png
vignettes/images/BRD/GenomicBinsNorm_Fig08.png
vignettes/images/BRD/GenomicBins_Fig01.png
vignettes/images/BRD/PreviewBRD_Fig06.png
vignettes/images/BRD/ScatterPlotsNorm_Fig09.png
vignettes/images/BRD/ScatterPlotsNorm_Fig10.png
vignettes/images/BRD/ScatterPlotsNorm_Fig11.png
vignettes/images/BRD/ScatterPlotsNorm_Fig12.png
vignettes/images/BRD/ScatterPlots_Fig02.png
vignettes/images/BRD/ScatterPlots_Fig03.png
vignettes/images/BRD/ScatterPlots_Fig04.png
vignettes/images/BRD/ScatterPlots_Fig05.png
vignettes/images/BRD/TestBRD_Fig07.png
vignettes/images/Overview.png
benja0x40/Tightrope documentation built on May 24, 2019, 1:35 a.m.