Files in benja0x40/Tightrope
ChIP-seq normalization according to background reads density
.Rbuildignore
.travis.yml
DESCRIPTION
LICENSE
NAMESPACE
R/BRD_V3.R
R/BuildGeneFeatures.R
R/CDaDaDR_2D.R
R/GenomicRanges.R
R/PlotBRD_V3.R
R/ReadCountMatrix.R
R/Tightrope.R
R/UCSC.R
R/mv_gmm.R
R/z_arguments.R
R/z_counts.R
R/z_data.R
R/z_matrixes.R
R/z_simulation.R
R/zzz.R
README.md
codecov.yml
data/CGI_hg38.rda
data/CGI_mm10.rda
data/EGA91_human.rda
data/EGA91_mouse.rda
data/NSC_K27M.rda
data/hg38_blacklist.rda
data/mm10_blacklist.rda
inst/doc/Annotations.R
inst/doc/Annotations.Rmd
inst/doc/Annotations.html
inst/doc/BRD.R
inst/doc/BRD.Rmd
inst/doc/BRD.html
man/AddByRow.Rd
man/BRD.Rd
man/BackgroundCandidates.Rd
man/BuildGeneFeatures.Rd
man/BuildSeqInfo.Rd
man/CDaDaDR.2D.Rd
man/CGI_hg38.Rd
man/CGI_mm10.Rd
man/CleanupGRanges.Rd
man/ClonalArg.Rd
man/ConsensusGRanges.Rd
man/CoveredLength.Rd
man/DefaultArgs.Rd
man/DefaultOptions.Rd
man/DefineSimulation.Rd
man/DetectCounts.Rd
man/DitherCounts.Rd
man/EGA91_human.Rd
man/EGA91_mouse.Rd
man/FlatGRanges.Rd
man/GenomicCoverage.Rd
man/GenomicTiling.Rd
man/ImportCpGIslandExt.Rd
man/ImportGenomicRanges.Rd
man/ImportLiftOverChain.Rd
man/MakeSimulation.Rd
man/MulByRow.Rd
man/NSC_K27M.Rd
man/NonZeroCounts.Rd
man/NormalizeCountMatrix.Rd
man/PlotBRD.Rd
man/PlotCountDistributions.Rd
man/RandomCounts.Rd
man/ReadCountMatrix.Rd
man/RemoveOptions.Rd
man/ResetOptions.Rd
man/ScalingFactors.Rd
man/Tightrope.Rd
man/VectorArgs.Rd
man/bg_ranking.Rd
man/df2grg.Rd
man/hg38_blacklist.Rd
man/m2v.Rd
man/mm10_blacklist.Rd
man/mv_emloop.Rd
man/mv_expectation.Rd
man/mv_gmm.Rd
man/mv_init_param.Rd
man/mv_maximization.Rd
man/mv_mle.Rd
man/mv_pdf.Rd
man/mv_rsg.Rd
man/v2m.Rd
man/xy2md.Rd
tests/testthat.R
tests/testthat/test_GenomicRanges.R
tests/testthat/test_Tightrope.R
tests/testthat/test_UCSC.R
tests/testthat/test_z_arguments.R
tests/testthat/test_z_counts.R
tests/testthat/test_z_matrixes.R
tests/testthat/test_z_simulation.R
vignettes/Annotations.Rmd
vignettes/BRD.Rmd
vignettes/images/Algorithm.png
vignettes/images/BRD/GenomicBinsNorm_Fig08.png
vignettes/images/BRD/GenomicBins_Fig01.png
vignettes/images/BRD/PreviewBRD_Fig06.png
vignettes/images/BRD/ScatterPlotsNorm_Fig09.png
vignettes/images/BRD/ScatterPlotsNorm_Fig10.png
vignettes/images/BRD/ScatterPlotsNorm_Fig11.png
vignettes/images/BRD/ScatterPlotsNorm_Fig12.png
vignettes/images/BRD/ScatterPlots_Fig02.png
vignettes/images/BRD/ScatterPlots_Fig03.png
vignettes/images/BRD/ScatterPlots_Fig04.png
vignettes/images/BRD/ScatterPlots_Fig05.png
vignettes/images/BRD/TestBRD_Fig07.png
vignettes/images/Overview.png
