PlotBRD: Control plots from BRD results

In benja0x40/Tightrope: ChIP-seq normalization according to background reads density

Description

The PlotBRD function produces control graphs representing intermediate results of the BRD function. These control graphs are useful to adapt parameters of the BRD method to the considered read count matrix.

Usage

PlotBRD(brd, title = "", plots = c("density", "clusters", "thresholds",
  "distributions"), palette = "magma", gradient = "hcl.duo.light",
  saturation = 1, with.axes = TRUE, with.legend = TRUE, res = 400)

Arguments

brd	result from calling the BRD function.
title	common title for the generated plots (default = none).
plots	character vector specifying which plots are being generated. By default PlotBRD generates 4 plots named "density", "clusters", "thresholds", and "distributions". It is possible to generate only a subset of these plots by using the corresponding vector of plot names, like for instance plots = c("density", "thresholds").
with.axes	logical, include plot axes or not (default = TRUE, yes).
with.legend	logical, include legends or not (default = TRUE, yes).
res	resolution in number of bins for the "thresholds" plot (default = 400).

See Also

BRD, CDaDaDR.2D

benja0x40/Tightrope documentation built on May 24, 2019, 1:35 a.m.