DefineSimulation: Define different populations for ChIP-seq simulations

In benja0x40/Tightrope: ChIP-seq normalization according to background reads density

Description

Define different populations for ChIP-seq simulations

Usage

DefineSimulation(chip = 3, replicate = 1, input = 2,
  enrichment = c(1, 3), patterns = "^")

Arguments

chip	number of ChIP profiles (default = 3).
replicate	number of replicates per ChIP profile (default = 1, no replicate).
input	number of Input profiles (default = 2).
enrichment	numeric vector defining the range of ChIP enrichements (default = c(1, 3)).
patterns	character vector, made only of symbols "+", "-", "^" and "v".

Value

DefineSimulation returns a matrix of parameters.

See Also

MakeSimulation

benja0x40/Tightrope documentation built on May 24, 2019, 1:35 a.m.