NormalizeCountMatrix: Apply BRD scaling factors
In benja0x40/Tightrope: ChIP-seq normalization according to background reads density
Description
Usage
Arguments
Value
See Also
Description
Apply precomputed BRD normalization factors to a read count matrix.
Use as.log2 = TRUE if you want to provide a matrix of log2
transformed read counts instead of raw read counts.
Usage
1
NormalizeCountMatrix(x, brd, as.log2 = FALSE)
Arguments
x
matrix of read counts (rows = observations, columns = samples or conditions).
brd
result of a prior call to the BRD function.
as.log2
logical (default = FALSE, no).
Value
NormalizeCountMatrix returns a matrix.
See Also
BRD,
ScalingFactors,
ReadCountMatrix
benja0x40/Tightrope documentation built on May 24, 2019, 1:35 a.m.
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Description Usage Arguments Value See Also
Description
Apply precomputed BRD normalization factors to a read count matrix.
Use as.log2 = TRUE if you want to provide a matrix of log2
transformed read counts instead of raw read counts.
Usage
1 | NormalizeCountMatrix(x, brd, as.log2 = FALSE)
|
Arguments
x |
matrix of read counts (rows = observations, columns = samples or conditions). |
brd |
result of a prior call to the BRD function. |
as.log2 |
logical (default = FALSE, no). |
Value
NormalizeCountMatrix returns a matrix.
See Also
BRD, ScalingFactors, ReadCountMatrix
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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