AnnoyNN: Run annoy Ref: Seurat

In beyondpie/pureRUtils: Commonly used R functions with pure R codes

Run annoy Ref: Seurat

Description

Run annoy Ref: Seurat

Usage

AnnoyNN(
  data,
  query = data,
  metric = "euclidean",
  n.trees = 50,
  k,
  search.k = -1,
  include.distance = TRUE,
  index = NULL
)

Arguments

data	Data to build the index with
query	A set of data to be queried against data
metric	Distance metric; can be one of "euclidean", "cosine", "manhattan", "hamming"
n.trees	More trees gives higher precision when querying
k	Number of neighbors
search.k	During the query it will inspect up to search_k nodes which gives you a run-time tradeoff between better accuracy and speed.
include.distance	Include the corresponding distances
index	optional index object, will be recomputed if not provided

Value

list(nn.idx, nn.dists)

beyondpie/pureRUtils documentation built on Jan. 10, 2023, 3:22 a.m.