addMatToSnap: Add bmat or gmat to snap

In beyondpie/pureRUtils: Commonly used R functions with pure R codes

Add bmat or gmat to snap

Description

Add bmat or gmat to snap

Usage

addMatToSnap(
  snap,
  cellGroup = NULL,
  group = NULL,
  outDir = NULL,
  matType = "bmat",
  gencode = "vM16",
  ndp = -1,
  ncores = 2,
  force = TRUE,
  binSize = 5000,
  coverFile = TRUE,
  prefix = "snap"
)

Arguments

snap	snap object
cellGroup	vector of characters cluster labels for snap default is NULL
group	characters which cluster needes default is NULL
outDir	characters default is NULL
matType	characters default is "bmat"
gencode	characters default is "vM16"
ndp	integer default is -1 if its value is larger than 0, then down sampling will be used.
ncores	integer default is 2
force	bool default is TRUE if add mat even the mat already exists
binSize	integer default is 5000
coverFile	bool default is TRUE when set it TRUE, it will cover the output file if exists.
prefix	characters default is "snap", which is used for output.

Value

snap object with corresponding mat.

beyondpie/pureRUtils documentation built on Jan. 10, 2023, 3:22 a.m.