plotDotplot: Get Seurat dot plot for snap gmat.

In beyondpie/pureRUtils: Commonly used R functions with pure R codes

Get Seurat dot plot for snap gmat.

Description

Get Seurat dot plot for snap gmat.

Usage

plotDotplot(
  snap = NULL,
  snapList = NULL,
  cluster = NULL,
  features,
  groupBy = "cluster",
  cellidSep = ".",
  axis.text.x.angle = 30,
  axis.text.x.hjust = 1,
  scaleSizeMin = 4,
  scaleSizeMax = 6,
  scaleColorLow = "blue",
  scaleColorMid = "white",
  scaleColorHigh = "red",
  ...
)

Arguments

snap	snap object, default is NULL
snapList	list of snap object, default is NULL
cluster	vector of characters, integers, or factors must have names, which are the cell ids. Cluster size can be larger than snap or snapList size, but have to make sure all the cells in snap or snapList have the cluster identification.
features	vector of characters, genes for plotting.
cellidSep	characters default is "."
axis.text.x.angle	numeric, default is 30
axis.text.x.hjust	numeric, default is 1
scaleSizeMin	integer, default is 4
scaleSizeMax	integer, default is 6
scaleColorLow	color name, default is "blue"
scaleColorMid	color name, default is "white"
scaleColorHigh	color name, default is "red"
...	used for Seurat::DotPlot function
group.by	characters default is cluster

Value

ggplot object

beyondpie/pureRUtils documentation built on Jan. 10, 2023, 3:22 a.m.