getOverlapMatrixOld: Calculate Overlap Score matrix for ATAC and RNA jointly...

In beyondpie/pureRUtils: Commonly used R functions with pure R codes

Calculate Overlap Score matrix for ATAC and RNA jointly embedding metaTable. Deprecated

Description

Based on the co-embeding clustering result, we summation the minmum scores of the percentages of cells on either ATAC or RNA group in each cluster. This function is provided by Yang Li with minor modification, and now is deprecated.

Usage

getOverlapMatrixOld(
  meta,
  ident = "coembed.idents",
  atacCol = "MajorType",
  rnaCol = "ClusterName"
)

Arguments

meta	data.frame, three columns as ident, atacCluster, rnaCluster defined as in the following parameters
ident	characters, name of column ident, i.e. the cluster Ids for the co-embedded seurat, "coembed.idents" as default.
atacCol	characters, name of column atac, "MajorType"as default
rnaCol	characters, name of column rna, "ClusterName" as default

Value

data.frame of numeric, atac by rna

beyondpie/pureRUtils documentation built on Jan. 10, 2023, 3:22 a.m.