queryEmbedding: SnapATAC query embedding.

In beyondpie/pureRUtils: Commonly used R functions with pure R codes

SnapATAC query embedding.

Description

SnapATAC query embedding.

Usage

queryEmbedding(
  snapLandmark = NULL,
  snapLandmarkFile = NULL,
  snapQuery = NULL,
  snapQueryFile = NULL,
  binSize = 5000,
  outFile = NULL,
  chunkSize = 20000,
  removeBmat = TRUE,
  removeJmat = TRUE
)

Arguments

snapLandmark	snap object of SnapATAC, default NULL
snapQuery	snap object of SnapATAC, default NULL
snapQueryFile	characters name of the snap File to load, default NULL
binSize	integer dim of bmat, default 5,000
outFile	characters to which we write snap with embedding, default NULL
chunkSize	integer default 20,000
removeBmat	bool default FALSE
removeJmat	bool default FALSE
snaplandmarkFile	characters name of the snap File to load, default NULL

Value

SnapObject

beyondpie/pureRUtils documentation built on Jan. 10, 2023, 3:22 a.m.