plot2D: Generate list of ggplot figures of umap/tsne on the features...

In beyondpie/pureRUtils: Commonly used R functions with pure R codes

Generate list of ggplot figures of umap/tsne on the features If some feature is not in the meta, will have a NULL.

Description

Generate list of ggplot figures of umap/tsne on the features If some feature is not in the meta, will have a NULL.

Usage

plot2D(
  embed,
  meta,
  checkRowName = FALSE,
  names = c("cluster", "tsse", "log10UMI"),
  discretes = c(TRUE, FALSE, FALSE),
  legends = c(FALSE, TRUE, TRUE),
  addLabels = c(TRUE, FALSE, FALSE),
  n = 10000,
  ...
)

Arguments

embed	data.frame cell by (x, y) dim, rownames are cells.
meta	data.frame cell by features, rownames are cells, colnames are features.
checkRowName	bool, default FALSE
names	character vector, features to be draw Default is c("cluster", "tsse", "logumi")
discretes	bool vector, default is c(T, F, F)
legends	bool vector, default is c(F, T, T).
addLabels	bool vectors, default is c(T, F, F).
n	integer, number of down samples, default 10,000
...	parameters ggPoint, but seems no use there.

Value

list of ggplot object

beyondpie/pureRUtils documentation built on Jan. 10, 2023, 3:22 a.m.