API for bhklab/Xeva
Analysis of patient-derived xenograft (PDX) data
| Global functions | |
|---|---|
| .addBioBaseIDCol | Source code |
| .addlinetoplot | Source code |
| .appendToList | Source code |
| .avgResponse | Source code |
| .batch2DataFram | Source code |
| .calculatRowColStat | Source code |
| .castDataFram | Source code |
| .checkDrugSlot | Source code |
| .checkExperimentDesign | Source code |
| .checkIfColPresentinModel | Source code |
| .checkModel | Source code |
| .checkNumericIntCharZero | Source code |
| .checkResMes | Source code |
| .checkUnqLength | Source code |
| .checkmodToBiobaseMapSlot | Source code |
| .collapseRplicate | Source code |
| .creatSensitivitySlot | Source code |
| .creatSideBarPlot | Source code |
| .createListFromDF | Source code |
| .custom_cell_fun | Source code |
| .generateNewNameForBatch | Source code |
| .getBatchData | Source code |
| .getBestResponse | Source code |
| .getBioIdSensitivityDF | Source code |
| .getColumnsDF | Source code |
| .getExperimentDataFromAExpID | Source code |
| .getExperimentMultipalIDs | Source code |
| .getExpressionSet | Source code |
| .getSensitivityVal | Source code |
| .getTimeVarData | Source code |
| .ggplotEmptyTheme | Source code |
| .mRcolPalette | Source code |
| .mapBatchName2Id | Source code |
| .modelID2biobaseID | Source code |
| .normalize01 | Source code |
| .normalizeVolume | Source code |
| .pdxMI_data | Source code |
| .plotDose | Source code |
| .plotModelErrorBar | Source code |
| .plotMultipalModels | Source code |
| .rbindListOfDataframs | Source code |
| .reformatExpDesig | Source code |
| .removeNAcol | Source code |
| .reorderCol | Source code |
| .resetBatchDesign | Source code |
| .smoothCurve | Source code |
| .smoothModel | Source code |
| .sortPlotMat | Source code |
| .splitValue | Source code |
| .subsetExperimentSlotForDrug | Source code |
| .summarizePerBatchResponse | Source code |
| .summarizePerModelResponse | Source code |
| .tumorVolumeChange | Source code |
| ABC | Man page Source code |
| AUC | Man page Source code |
| PDXMI | Man page |
| TGI | Man page Source code |
| addExperimentalDesign | Man page |
| addExperimentalDesign,XevaSet-method | Man page |
| angle | Man page Source code |
| availableXevaSet | Source code |
| batchInfo | Man page |
| batchInfo,XevaSet-method | Man page |
| batch_response_class | Source code |
| brca | Man page |
| compute_association | Source code |
| createXevaModelClass | Source code |
| createXevaSet | Man page Source code |
| dosePlot | Man page Source code |
| downloadXevaSet | Man page Source code |
| drugInform | Man page |
| drugInform,XevaSet-method | Man page |
| drugSensitivitySig | Man page Source code |
| experimentSlotfromDf | Source code |
| extractBetweenTags | Source code |
| getBatchFormatted | Source code |
| getCI | Source code |
| getCellBoxCordi | Source code |
| getCor | Source code |
| getExperiment | Man page |
| getExperiment,XevaSet-method | Man page |
| getIndex | Source code |
| getMolecularProfiles | Man page Source code |
| getTestMat | Source code |
| getXevaSet | Source code |
| lmm | Man page Source code |
| mCI | Source code |
| mRECIST | Man page Source code |
| makePDXModClassS4 | Source code |
| mapModelSlotIds | Source code |
| model2BiobaseIdMap | Source code |
| modelClassS4Vars | Source code |
| modelInfo | Man page |
| modelInfo,XevaSet-method | Man page |
| model_response_class | Source code |
| pasteWithoutNA | Source code |
| plotBatch | Man page Source code |
| plotPDX | Man page Source code |
| plotWaterFall | Source code |
| plotmRECIST | Man page Source code |
| print.XevaSet | Source code |
| print.batchResponse | Man page Source code |
| print.modelResponse | Man page Source code |
| print.pdxBatch | Man page Source code |
| printAndCapture | Source code |
| removeZeroVar | Source code |
| repdx | Man page |
| response | Man page Source code |
| selectModelIds | Man page |
| selectModelIds,XevaSet-method | Man page |
| sensitivity | Man page Source code |
| setResponse | Man page Source code |
| slope | Man page Source code |
| subsetXeva | Man page Source code |
| summarizeMolecularProfiles | Man page Source code |
| summarizeResponse | Man page Source code |
| waterfall | Man page Source code |
