plotmRECIST: To plot mRECIST values
In bhklab/Xeva: Analysis of patient-derived xenograft (PDX) data

plotmRECIST

R Documentation

To plot mRECIST values

Description

plotmRECIST plots the mRECIST matrix obtained from summarizeResponse.

Usage

plotmRECIST(
  mat,
  control.name = NA,
  control.col = "#238b45",
  drug.col = "black",
  colPalette = NULL,
  name = "Drug & Models",
  sort = TRUE,
  row_fontsize = 12,
  col_fontsize = 12,
  draw_plot = TRUE
)

Arguments

`mat`	The mRECIST matrix where rows are drugs and columns are patients.
`control.name`	Name of the control.
`control.col`	Color of the control.
`drug.col`	Color of the drug names.
`colPalette`	Color palette for mRECIST values.
`name`	Title of the plot.
`sort`	If matrix should be sorted before plotting.
`row_fontsize`	Size of the row name font.
`col_fontsize`	Size of the column name font.
`draw_plot`	Default `TRUE` will plot the figure. If `FALSE`, return an object.

Value

mRECIST plot.

Examples

data(brca)
brca.mr <- summarizeResponse(brca, response.measure = "mRECIST", group.by="patient.id")
plotmRECIST(as.matrix(brca.mr), control.name = "untreated")

bhklab/Xeva documentation built on Nov. 30, 2024, 3:17 a.m.