API for bhklab/Xeva
Analysis of patient-derived xenograft (PDX) data

Global functions
.addBioBaseIDCol Source code
.addlinetoplot Source code
.appendToList Source code
.avgResponse Source code
.batch2DataFram Source code
.batchID2biobaseID Source code
.calculatRowColStat Source code
.castDataFram Source code
.checkDrugSlot Source code
.checkExperimentDesign Source code
.checkIfColPresentinModel Source code
.checkModel Source code
.checkNumericIntCharZero Source code
.checkResMes Source code
.checkUnqLength Source code
.checkmodToBiobaseMapSlot Source code
.collapseRplicate Source code
.creatSensitivitySlot Source code
.creatSideBarPlot Source code
.createListFromDF Source code
.custom_cell_fun Source code
.generateNewNameForBatch Source code
.getBatchData Source code
.getBestResponse Source code
.getBioIdSensitivityDF Source code
.getColumnsDF Source code
.getExperimentDataFromAExpID Source code
.getExperimentMultipalIDs Source code
.getExpressionSet Source code
.getSensitivityVal Source code
.getTimeVarData Source code
.ggplotEmptyTheme Source code
.mRcolPalette Source code
.mapBatchName2Id Source code
.modelID2biobaseID Source code
.normalize01 Source code
.normalizeVolume Source code
.pdxMI_data Source code
.plotDose Source code
.plotModelErrorBar Source code
.plotMultipalModels Source code
.rbindListOfDataframs Source code
.reformatExpDesig Source code
.removeNAcol Source code
.reorderCol Source code
.resetBatchDesign Source code
.smoothCurve Source code
.smoothModel Source code
.sortPlotMat Source code
.splitValue Source code
.subsetExperimentSlotForDrug Source code
.summarizePerBatchResponse Source code
.summarizePerModelResponse Source code
.tumorVolumeChange Source code
ABC Man page Source code
AUC Man page Source code
PDXMI Man page
TGI Man page Source code
addExperimentalDesign Man page
addExperimentalDesign,XevaSet-method Man page
angle Man page Source code
availableXevaSet Source code
batchInfo Man page
batchInfo,XevaSet-method Man page
batch_response_class Source code
brca Man page
compute_association Source code
createXevaModelClass Source code
createXevaSet Man page Source code
dosePlot Man page Source code
downloadXevaSet Man page Source code
drugInform Man page
drugInform,XevaSet-method Man page
drugSensitivitySig Man page Source code
experimentSlotfromDf Source code
extractBetweenTags Source code
getBatchAndMolData Man page Source code
getBatchFormatted Source code
getCI Source code
getCellBoxCordi Source code
getCor Source code
getExperiment Man page
getExperiment,XevaSet-method Man page
getIndex Source code
getMolecularProfiles Man page Source code
getTestMat Source code
getXevaSet Source code
lmm Man page Source code
mCI Source code
mRECIST Man page Source code
makePDXModClassS4 Source code
mapModelSlotIds Source code
model2BiobaseIdMap Source code
modelClassS4Vars Source code
modelInfo Man page
modelInfo,XevaSet-method Man page
model_response_class Source code
pasteWithoutNA Source code
plotBatch Man page Source code
plotPDX Man page Source code
plotWaterFall Source code
plotmRECIST Man page Source code
print.XevaSet Source code
print.batchResponse Man page Source code
print.modelResponse Man page Source code
print.pdxBatch Man page Source code
printAndCapture Source code
removeZeroVar Source code
repdx Man page
response Man page Source code
selectModelIds Man page
selectModelIds,XevaSet-method Man page
sensitivity Man page Source code
setResponse Man page Source code
slope Man page Source code
subsetXeva Man page Source code
summarizeMolecularProfiles Man page Source code
summarizeResponse Man page Source code
waterfall Man page Source code
bhklab/Xeva documentation built on Oct. 3, 2019, 7:46 a.m.