Files in bhklab/Xeva
Analysis of patient-derived xenograft (PDX) data
.github/.gitignore
.github/workflows/check-bioc.yml
.gitignore
DESCRIPTION
Meta/vignette.rds
NAMESPACE
NEWS
R/XevaSet_Class.R
R/access_expressionData_Functions.R
R/access_slot_drug.R
R/access_slot_expDesign.R
R/access_slot_experiment.R
R/access_slot_modToBiobase.R
R/access_slot_model.R
R/access_slot_sensitivity.R
R/auc.R
R/create_Experiment_slot.R
R/create_expDesign_slot.R
R/data.R
R/downloadXevaSet.R
R/drug_Sensitivity_Signature.R
R/expDesign_manuplation.R
R/geneDrug_association.R
R/get_model_batch_data.R
R/important_functions.R
R/lmm.R
R/mRECIST.R
R/pdx_model_class.R
R/plot_functions.R
R/plot_mRECIST.R
R/response_matrices.R
R/slope_and_angle.R
R/subset_Xeva.R
R/summ_response_Function.R
R/tgi.R
R/waterfall_plot.R
README.md
Rplots.pdf
data/PDXMI.rda
data/brca.rda
data/repdx.rda
doc/Xeva.R
doc/Xeva.Rnw
doc/Xeva.pdf
inst/extdata/batch_list.rds
inst/extdata/drug.csv
inst/extdata/experiments.csv
inst/extdata/model.csv
inst/extdata/modelToExpressionMap.csv
inst/extdata/rnaseq.rds
man/ABC.Rd
man/AUC.Rd
man/PDXMI.Rd
man/TGI.Rd
man/addExperimentalDesign.Rd
man/angle.Rd
man/batchInfo.Rd
man/brca.Rd
man/createXevaSet.Rd
man/dosePlot.Rd
man/downloadXevaSet.Rd
man/drugInform.Rd
man/drugSensitivitySig.Rd
man/getExperiment.Rd
man/getMolecularProfiles.Rd
man/lmm.Rd
man/mRECIST.Rd
man/modelInfo.Rd
man/plotPDX.Rd
man/plotmRECIST.Rd
man/print.batchResponse.Rd
man/print.modelResponse.Rd
man/print.pdxBatch.Rd
man/repdx.Rd
man/response.Rd
man/selectModelIds.Rd
man/sensitivity.Rd
man/setResponse.Rd
man/slope.Rd
man/subsetXeva.Rd
man/summarizeMolecularProfiles.Rd
man/summarizeResponse.Rd
man/waterfall.Rd
vignettes/Xeva.Rnw
vignettes/XevaBiblio.bib
vignettes/images/Xeva_batch_2.pdf
