Man pages for bhklab/Xeva
Analysis of patient-derived xenograft (PDX) data
| ABC | area between curves Computes the area between two time-volume... |
| addExperimentalDesign | Add a new experimental design |
| angle | compute angle Computes the angle between two time-volume... |
| AUC | area under the curve 'AUC' Returns area under the curve |
| batchInfo | Get batch information |
| bmRECIST | compute mRECIST for a batch Computes the mRECIST for a batch. |
| brca | PDXE breast cancer dataset |
| createXevaSet | XevaSet constructor |
| dosePlot | plot dose data |
| downloadXevaSet | Download a XevaSet object or table of available XevaSet... |
| drugInform | Get drug information Get the drug information slot from a... |
| drugSensitivitySig | get drug sensitivity values |
| getBatchAndMolData | data(brca) object=brca; mDataType="RNASeq"; drug="BGJ398";... |
| getExperiment | Get PDX experiment data |
| getMolecularProfiles | Get molecular profiles from a XevaSet object |
| lmm | linear mixed model |
| modelInfo | modelInfo Generic Generic for modelInfo method |
| mRECIST | Computes the mRECIST |
| PDXMI | PDX-MI data |
| plotmRECIST | To plot mRECIST values |
| plotPDX | Plot batch data |
| print.batchResponse | Print the batch response |
| print.modelResponse | Print the model response |
| print.pdxBatch | Print the pdx batch |
| repdx | Example PDX dataset |
| response | compute PDX response |
| selectModelIds | To select model IDs based on drug name and/or tissue type. |
| sensitivity | Get sensitivity for an Xeva object |
| setResponse | set PDX response |
| slope | Computes slope |
| subsetXeva | Subset Xeva object. |
| summarizeData | Summarize molecular profiles and drug response data |
| summarizeResponse | Summarize Response of PDXs |
| TGI | tumor growth inhibition (TGI) Computes the tumor growth... |
| volume | compute PDX volume 'volume' computes PDXs tumor volume from... |
| waterfall | waterfall plot Creates waterfall plot for a given drug. |
