sig.ggi: Gene expression Grade Index (GGI) as published in Sotiriou et...
In bhklab/genefu: Computation of Gene Expression-Based Signatures in Breast Cancer
sig.ggi R Documentation
Gene expression Grade Index (GGI) as published in Sotiriou et al. 2006
Description
List of 128 affymetrix hgu133a probesets representing 97 unique genes included in the GGI signature. The "EntrezGene.ID" column allows for mapping and "grade" defines the up-regulation of the expressions either in histological grade 1 or 3.
Usage
data(sig.ggi)
Format
sig.ggi is a matrix with 9 columns containing the annotations and information related to the signature itself.
Source
http://jnci.oxfordjournals.org/cgi/content/full/98/4/262/DC1
References
Sotiriou C, Wirapati P, Loi S, Harris A, Bergh J, Smeds J, Farmer P, Praz V, Haibe-Kains B, Lallemand F, Buyse M, Piccart MJ and Delorenzi M (2006) "Gene expression profiling in breast cancer: Understanding the molecular basis of histologic grade to improve prognosis", Journal of National Cancer Institute, 98:262–272
bhklab/genefu documentation built on Nov. 30, 2024, 9:03 p.m.
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| sig.ggi | R Documentation |
Gene expression Grade Index (GGI) as published in Sotiriou et al. 2006
Description
List of 128 affymetrix hgu133a probesets representing 97 unique genes included in the GGI signature. The "EntrezGene.ID" column allows for mapping and "grade" defines the up-regulation of the expressions either in histological grade 1 or 3.
Usage
data(sig.ggi)
Format
sig.ggi is a matrix with 9 columns containing the annotations and information related to the signature itself.
Source
http://jnci.oxfordjournals.org/cgi/content/full/98/4/262/DC1
References
Sotiriou C, Wirapati P, Loi S, Harris A, Bergh J, Smeds J, Farmer P, Praz V, Haibe-Kains B, Lallemand F, Buyse M, Piccart MJ and Delorenzi M (2006) "Gene expression profiling in breast cancer: Understanding the molecular basis of histologic grade to improve prognosis", Journal of National Cancer Institute, 98:262–272
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Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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