ssp2003: SSP2003 classifier for identification of breast cancer...

In bhklab/genefu: Computation of Gene Expression-Based Signatures in Breast Cancer

SSP2003 classifier for identification of breast cancer molecular subtypes (Sorlie et al 2003)

Description

List of parameters defining the SSP2003 classifier for identification of breast cancer molecular subtypes (Sorlie et al 2003).

Usage

data(ssp2003)
data(ssp2003.robust)
data(ssp2003.scale)

Format

List of parameters for SSP2003:

• centroids: Gene expression centroids for each subtype.

• centroids.map: Mapping for centroids.

• method.cor: Method of correlation used to compute distance to the centroids.

• method.centroids: Method used to compute the centroids.

• std: Method used to compute the centroids.

• mins: Minimum number of samples within each cluster allowed during the fitting of the model.

Source

http://www.pnas.org/content/100/14/8418

References

T. Sorlie and R. Tibshirani and J. Parker and T. Hastie and J. S. Marron and A. Nobel and S. Deng and H. Johnsen and R. Pesich and S. Geister and J. Demeter and C. Perou and P. E. Lonning and P. O. Brown and A. L. Borresen-Dale and D. Botstein (2003) "Repeated Observation of Breast Tumor Subtypes in Independent Gene Expression Data Sets", Proceedings of the National Academy of Sciences, 1(14):8418–8423

bhklab/genefu documentation built on Nov. 30, 2024, 9:03 p.m.