API for bimberlabinternal/OOSAP
OHSU-ONPRC Single-cell Analysis Package
| Global functions | |
|---|---|
| .CheckGeneInputs | Source code |
| .ClassifyCellsCustom | Source code |
| .ConcatPreferentially | Source code |
| .DoCellFilter | Source code |
| .DoModuleScoreClassify | Source code |
| .GetCCGenes | Source code |
| .GetG2MGenes | Source code |
| .GetSPhaseGenes | Source code |
| .InferMitoFeaturesFromGtf | Source code |
| .InferPerplexity | Source code |
| .InferPerplexityFromSeuratObj | Source code |
| .IsEmpty | Source code |
| .PrintSeuratPlots | Source code |
| .QueryDAVID | Source code |
| .QueryEnsembl | Source code |
| .QuerySTRINGdb | Source code |
| .ScoreCellTypeFromMCE | Source code |
| .WriteLogMsg | Source code |
| AddClonesToPlot | Man page Source code |
| AliasGeneNames | Man page Source code |
| AnnotateMitoGenes | Source code |
| AvgCellExprs | Man page Source code |
| CalculateModuleScoreAvg | Man page Source code |
| CheckDuplicatedCellNames | Man page Source code |
| ClassifySGS | Man page Source code |
| ClassifySGSAndApply | Man page Source code |
| ClassifySGS_Multiple | Man page Source code |
| ColorTheme | Man page Source code |
| CreateSeuratObj | Man page Source code |
| DimPlot_SingleRClassLabs | Man page Source code |
| DoMCEClassify | Source code |
| EnsmbleVarImp | Source code |
| FilterCloneNames | Man page Source code |
| FindClustersAndDimRedux | Man page Source code |
| FindElbow | Man page Source code |
| FindSeuratElbow | Man page Source code |
| Find_Markers | Man page Source code |
| Garnett_Classification | Man page Source code |
| GetEnsmbleVarImportance | Man page Source code |
| GetGeneIds | Man page Source code |
| GetTraingStats | Man page Source code |
| GetXYDataFromPlot | Man page Source code |
| HasStepRun | Man page Source code |
| LogAdd | Man page Source code |
| MDSmyDF | Man page Source code |
| MarkStepRun | Man page Source code |
| MergeSeuratObjs | Man page Source code |
| MultiClassifier_Cells | Man page |
| PCAmyDF | Man page |
| PerformEmptyDropletFiltering | Man page Source code |
| PerformEmptyDrops | Man page Source code |
| Phenotyping_GeneList | Man page Source code |
| PlotAvgExpr | Man page Source code |
| PlotBin2D | Man page Source code |
| PlotDiffComp | Man page Source code |
| PlotDiffComp2 | Man page Source code |
| PlotExprThrTab | Man page Source code |
| PlotFeatThrTab | Man page Source code |
| PlotHistDensOptima | Man page Source code |
| PlotImmuneMarkers | Man page Source code |
| PlotMarkerSeries | Man page Source code |
| PlotMarkerSet | Man page Source code |
| PlotMyTable | Man page Source code |
| PrintQcPlots | Man page Source code |
| ProcessSeurat1 | Man page Source code |
| QueryEnsemblSymbolAndHumanHomologs | Man page Source code |
| ReadAndFilter10xData | Man page Source code |
| RecomposeSDAmatrix | Man page Source code |
| RecreateSeuratObjFromSDAmatrix | Man page Source code |
| ReduceSerObj_HTO | Source code |
| RemoveCellCycle | Man page Source code |
| RemoveUnchangedOrZero | Man page Source code |
| RenameGenesUsingCD | Source code |
| RhesusGeneDavidConv | Source code |
| RunSingleR | Man page Source code |
| RunUMAP.Matrix | Man page Source code |
| SaveDimRedux | Man page Source code |
| Ser2Monicle_MakeNProcess | Man page Source code |
| SetIfNull | Man page Source code |
| Tabulate_SingleRClassLabs | Man page Source code |
| TranslateGeneNames | Man page Source code |
| TranslateToDAVID | Man page Source code |
| TranslateToEnsembl | Man page Source code |
| TranslateToStringDb | Man page Source code |
| TransposeDT | Man page Source code |
| UniformSampleDF_FacPor | Man page Source code |
| WichIn1not2 | Man page Source code |
| WriteCellBarcodes | Man page Source code |
| WriteSummaryMetrics | Man page Source code |
| bimodal_posDisHD | Man page Source code |
| bimodal_posDist1D | Man page |
| cdGenes | Man page |
| cells2AvgExprDGE | Man page Source code |
| doMergeCCA | Man page Source code |
| doMergeSimple | Man page Source code |
| find_peaks | Man page |
| frac_to_numeric | Man page Source code |
| ggUMAP | Man page Source code |
| gg_color_hue | Source code |
| is.even | Man page Source code |
| is.odd | Man page Source code |
| quickTabulate | Man page Source code |
| range01 | Man page Source code |
| range01b | Man page Source code |
