Files in bioarch-sjh/bacollite
Analysis of MALDI and LC-MS/MS spectral data using sequence data (mainly for collagen)
.Rbuildignore
.gitignore
.httr-oauth
DESCRIPTION
INSTALL.md
NAMESPACE
R/RcppExports.R
R/averageMSD.R
R/ba_gxy_probs.R
R/ba_nhyd.R
R/ba_plotseqpeaks.R
R/corlim_data.R
R/corlim_hits.R
R/corlim_plot.R
R/corlim_score.R
R/cut_with_enzyme.R
R/data.R
R/ggclassify.R
R/gpm_load.R
R/human_markers.R
R/lag_plot.R
R/ms_align.R
R/ms_fit.R
R/ms_iso.R
R/ms_iso_atom.R
R/ms_load.R
R/ms_subrange.R
R/ms_tpeaks.R
R/msms_align.R
R/parse_seq.R
R/plot_classification.R
R/ppclassify.R
R/pplate.R
R/ratios.R
R/seq_to_atoms.R
R/sppdiffs.R
R/sysdata.rda
R/usedynlib.R
R/validseq.R
R/xy_pos_prolines.R
README.md
TUTORIAL.md
analysis.md
bacollite.Rproj
data/amino_acid_codes.rda
data/bioarch_mammal_sequences.rda
data/bioarch_mammal_sequences1.0.0.rda
data/dm_cow.rda
data/dm_deer.rda
data/dm_goat.rda
data/dm_sheep.rda
data/extdata/20150326_SF_YG65_94_I11.txt
data/extdata/20150326_SF_YG65_94_I14.txt
data/extdata/20150326_SF_YG65_94_I17.txt
data/pepcow.rda
data/pepgoat.rda
data/pepsheep.rda
datop.txt
inst/extdata/20150326_SF_YG65_94_I11.txt
inst/extdata/20150326_SF_YG65_94_I14.txt
inst/extdata/20150326_SF_YG65_94_I17.txt
inst/extdata/Human_Peptide_Marker_Alternatives.dat
inst/extdata/Human_Peptide_Markers.dat
inst/extdata/Human_Peptide_Markers2.dat
inst/extdata/gpm_human_collagen_COL1A1.dat
inst/extdata/gpm_human_collagen_COL1A2.dat
inst/extdata/scg_seqs.txt
man/amino_acid_codes.Rd
man/averageMSD.Rd
man/ba_gxy_probs.Rd
man/ba_nhyd.Rd
man/ba_plotseqpeaks.Rd
man/bioarch_mammal_sequences.Rd
man/bms0.1.2.Rd
man/corlim_data.Rd
man/corlim_hits.Rd
man/corlim_plot.Rd
man/dm_cow.Rd
man/dm_goat.Rd
man/dm_sheep.Rd
man/lag_plot.Rd
man/load.gpm.Rd
man/load.gpm.raw.Rd
man/load.human.markers.Rd
man/load.mcs.Rd
man/load.sample.Rd
man/load.sequence.Rd
man/ms_align.Rd
man/ms_fit.Rd
man/ms_iso.Rd
man/ms_iso_atom.Rd
man/ms_subrange.Rd
man/ms_tpeaks.Rd
man/msms_align.Rd
man/parse.seq.Rd
man/pepcow.Rd
man/pepgoat.Rd
man/pepsheep.Rd
man/peptide.ratio.Rd
man/pplate.Rd
man/seq_to_atoms.Rd
man/spp.diffs.Rd
man/ts_index.Rd
man/validseq.Rd
man/xy.ypos.prolines.Rd
src-i386/RcppExports.cpp
src-i386/RcppExports.o
src-i386/RcppIso.cpp
src-i386/RcppIso.o
src-i386/bacollite.dll
src-i386/riso.cpp
src-i386/riso.h
src-i386/riso.o
src-i386/timestwo.cpp
src-i386/timestwo.o
src-x64/RcppExports.cpp
src-x64/RcppExports.o
src-x64/RcppIso.cpp
src-x64/RcppIso.o
src-x64/bacollite.dll
src-x64/riso.cpp
src-x64/riso.h
src-x64/riso.o
src-x64/timestwo.cpp
src-x64/timestwo.o
src/.gitignore
src/RcppExports.cpp
src/RcppIso.cpp
src/riso.cpp
src/riso.h
src/timestwo.cpp
tests/testthat.R
tests/testthat/test_seqdata.R
vignettes/.gitignore
vignettes/Adding_equus_to_bacollite.Rmd
vignettes/SI_Aligning_samples_to_peptides.Rmd
vignettes/procplate.Rmd
withoutR/cpp/Makefile
withoutR/cpp/README.md
withoutR/cpp/riso.cpp
withoutR/cpp/riso.h
withoutR/cpp/riso.o
withoutR/cpp/test_iso
withoutR/cpp/test_iso.cpp
withoutR/cpp/test_iso.o
