INSTALL.md

In bioarch-sjh/bacollite: Analysis of MALDI and LC-MS/MS spectral data using sequence data (mainly for collagen)

Installing bacollite

The bacollite package was built using devtools, and is hosted on github. To install the package in R, you'll need to have devtools installed first:

install.packages("devtools")

Then load the library

library(devtools)

Then install bacollite:

devtools::install_github("bioarch-sjh/bacollite",build_vignettes=T,force=T)

Note the above command installs the vignettes for bacollite (i.e. the long-form help), and forces the install of the github version over any previous install. You can omit these arguments if you know what you are doing.

Linux-Ubuntu notes

If devtools install fails, you may need to install curl, which has to be done outside of R in a Terminal. Type the following:

sudo apt-get install libcurl4-openssl-dev

bioarch-sjh/bacollite documentation built on Oct. 7, 2022, 3:34 p.m.