check_feature_abd: Check feature abundance table
In biobakery/MMUPHin: Meta-analysis Methods with Uniform Pipeline for Heterogeneity in Microbiome Studies
check_feature_abd R Documentation
Check feature abundance table
Description
Given a feature abundance table, make sure that a) it has no missing values,
b) all values are non-negative, c) it is either proportions (all no greater
than 1) or counts (all integers).
Usage
check_feature_abd(feature_abd)
Arguments
feature_abd
feature-by-sample matrix of abundances (proportions or
counts).
Value
returns an error if any of the check fails. Otherwise either "counts"
or "proportions"
biobakery/MMUPHin documentation built on March 30, 2024, 4:50 a.m.
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| check_feature_abd | R Documentation |
Check feature abundance table
Description
Given a feature abundance table, make sure that a) it has no missing values, b) all values are non-negative, c) it is either proportions (all no greater than 1) or counts (all integers).
Usage
check_feature_abd(feature_abd)
Arguments
feature_abd |
feature-by-sample matrix of abundances (proportions or counts). |
Value
returns an error if any of the check fails. Otherwise either "counts" or "proportions"
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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