normalize_features: Normalize feature abundance table (modified from Maaslin2)
In biobakery/MMUPHin: Meta-analysis Methods with Uniform Pipeline for Heterogeneity in Microbiome Studies
normalize_features R Documentation
Normalize feature abundance table (modified from Maaslin2)
Description
Normalize feature abundance table (modified from Maaslin2)
Usage
normalize_features(features, normalization = "NONE", pseudo_count = 0)
Arguments
features
feature-by-sample matrix of abundances (proportions or
counts).
normalization
normalization method.
pseudo_count
pseudo count to be added to feature_abd.
Value
normalized abundance table.
biobakery/MMUPHin documentation built on March 30, 2024, 4:50 a.m.
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| normalize_features | R Documentation |
Normalize feature abundance table (modified from Maaslin2)
Description
Normalize feature abundance table (modified from Maaslin2)
Usage
normalize_features(features, normalization = "NONE", pseudo_count = 0)
Arguments
features |
feature-by-sample matrix of abundances (proportions or counts). |
normalization |
normalization method. |
pseudo_count |
pseudo count to be added to feature_abd. |
Value
normalized abundance table.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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