fit_EB: Parametric estimation of per-batch location and scale...

In biobakery/MMUPHin: Meta-analysis Methods with Uniform Pipeline for Heterogeneity in Microbiome Studies

Parametric estimation of per-batch location and scale parameters, and Empirical Bayes estimation of their priors

Description

Parametric estimation of per-batch location and scale parameters, and Empirical Bayes estimation of their priors

Usage

fit_EB(s_data, l_stand_feature, batchmod, n_batch, l_ind)

Arguments

s_data	feature-by-sample matrix of standardized abundances.
l_stand_feature	list of per-feature standardization fits, as returned by fit_stand_feature.
batchmod	design matrix for batch variables.
n_batch	number of batches in the data.
l_ind	list of indicator matrices, as returned by construct_ind.

Value

list of parameter estimations.

biobakery/MMUPHin documentation built on March 30, 2024, 4:50 a.m.