diagnostic_adjust_batch: Diagnostic visualization for adj_batch function

In biobakery/MMUPHin: Meta-analysis Methods with Uniform Pipeline for Heterogeneity in Microbiome Studies

Diagnostic visualization for adj_batch function

Description

Diagnostic visualization for adj_batch function

Usage

diagnostic_adjust_batch(feature_abd, feature_abd_adj, var_batch, gamma_hat,
  gamma_star, output)

Arguments

feature_abd	original feature-by-sample matrix of abundances (proportions or counts).
feature_abd_adj	feature-by-sample matrix of batch-adjusted feature abundances, with covariate effects retained and scales consistent with original abundance matrix.
var_batch	the batch variable (should be a factor).
gamma_hat	estimated per feature-batch gamma parameters.
gamma_star	shrinked per feature-batch gamma parameters
output	output file name

Value

(invisbly) the ggplot2 plot object

biobakery/MMUPHin documentation built on March 30, 2024, 4:50 a.m.