construct_ind: Create indicator matrices for which feature/batch/samples to...
In biobakery/MMUPHin: Meta-analysis Methods with Uniform Pipeline for Heterogeneity in Microbiome Studies
View source: R/helpers_adjust_batch.R
construct_ind R Documentation
Create indicator matrices for which feature/batch/samples to adjust. This is
relevant for zero_inflation is TRUE and only non-zero values are adjusted.
Description
Create indicator matrices for which feature/batch/samples to adjust. This is
relevant for zero_inflation is TRUE and only non-zero values are adjusted.
Usage
construct_ind(feature_abd, n_batch, design, zero_inflation)
Arguments
feature_abd
feature-by-sample matrix of abundances (proportions or
counts).
n_batch
number of batches in the data.
design
design matrix.
zero_inflation
zero inflation flag.
Value
list of indicator matrices needed by fitting in adjust_batch.
biobakery/MMUPHin documentation built on March 30, 2024, 4:50 a.m.
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View source: R/helpers_adjust_batch.R
| construct_ind | R Documentation |
Create indicator matrices for which feature/batch/samples to adjust. This is relevant for zero_inflation is TRUE and only non-zero values are adjusted.
Description
Create indicator matrices for which feature/batch/samples to adjust. This is relevant for zero_inflation is TRUE and only non-zero values are adjusted.
Usage
construct_ind(feature_abd, n_batch, design, zero_inflation)
Arguments
feature_abd |
feature-by-sample matrix of abundances (proportions or counts). |
n_batch |
number of batches in the data. |
design |
design matrix. |
zero_inflation |
zero inflation flag. |
Value
list of indicator matrices needed by fitting in adjust_batch.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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