fit_shrink: A posteriori shrink per-batch location and scale parameters...

In biobakery/MMUPHin: Meta-analysis Methods with Uniform Pipeline for Heterogeneity in Microbiome Studies

A posteriori shrink per-batch location and scale parameters towards their EB priors

Description

A posteriori shrink per-batch location and scale parameters towards their EB priors

Usage

fit_shrink(s_data, l_params, batchmod, n_batch, l_ind, control)

Arguments

s_data	feature-by-sample matrix of standardized abundances.
l_params	list of parameter fits, as returned by fit_EB.
batchmod	design matrix for batch variables.
n_batch	number of batches in the data.
l_ind	list of indicator matrices, as returned by construct_ind.
control	list of control parameters (passed on to it_sol)

Value

list of shrinked per-batch location and scale parameters.

biobakery/MMUPHin documentation built on March 30, 2024, 4:50 a.m.