melonnpan.summarize: Summarize MelonnPan results

In biobakery/melonnpan: Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolite Profiles

Summarize MelonnPan results

Description

This function returns prediction accuracy from a pair of measured and predicted metabolites tables.

Usage

melonnpan.summarize(
  metab = metab,
  pred = pred,
  method = method,
  correction = correction,
  cutoff = cutoff
)

Arguments

metab	Measured metabolite relative abundances (normalized). Should have same features and samples as pred.
pred	Predicted metabolite relative abundances (normalized). Should have same features and samples as metab.
method	Method to correlate measured and predicted metabolites. Default is 'spearman'.
correction	Multiplicity adjustment method, same as 'p.adjust'. Default is 'fdr'.
cutoff	Q-value threshold for significant prediction. Default is 0.05.

biobakery/melonnpan documentation built on March 26, 2024, 11:42 p.m.