melonnpan.summarize: Summarize MelonnPan results

Description Usage Arguments

View source: R/melonnpan_summarize.R

Description

This function returns prediction accuracy from a pair of measured and predicted metabolites tables.

Usage

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melonnpan.summarize(
  metab = metab,
  pred = pred,
  method = method,
  correction = correction,
  cutoff = cutoff
)

Arguments

metab

Measured metabolite relative abundances (normalized to proportional data ranging from 0 to 1.0). Should have same features and samples as pred.

pred

Predicted metabolite relative abundances (normalized to proportional data ranging from 0 to 1.0). Should have same features and samples as metab.

method

Method to correlate measured and predicted metabolites. Default is 'spearman'.

correction

Multiplicity adjustment method, same as 'p.adjust'. Default is 'fdr'.

cutoff

Q-value threshold for significant prediction. Default is 0.05.


biobakery/melonnpan documentation built on May 17, 2021, 3:27 a.m.