melonnpan.training.data: Normalized gene family abundances in the PRISM dataset...

Description Usage Format References

Description

Normalized gene family abundance used for MelonnPan training (Mallick et al., 2019).

Usage

1

Format

A data frame of normalized gene familty abundances, as described in Mallick et al. (2019), with subjects in rows and UniRef90 IDs in columns.

References

Franzosa EA et al. (2019). Gut microbiome structure and metabolic activity in inflammatory bowel disease. Nature Microbiology 4(2):293-305.

Mallick H, Franzosa EA, McIver LJ, Banerjee S, Sirota-Madi A, Kostic AD, Clish CB, Vlamakis H, Xavier R, Huttenhower C (2019). Predictive metabolomic profiling of microbial communities using amplicon or metagenomic sequences. Nature Communications 10(1):3136-3146.


biobakery/melonnpan documentation built on May 17, 2021, 3:27 a.m.