melonnpan.training.data: Normalized gene family abundances in the PRISM dataset...
In biobakery/melonnpan: Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolite Profiles
melonnpan.training.data R Documentation
Normalized gene family abundances in the
PRISM dataset (Franzosa et al., 2019).
Description
Normalized gene family abundance used for
MelonnPan training (Mallick et al., 2019).
Usage
data(melonnpan.training.data)
Format
A data frame of normalized gene familty abundances,
as described in Mallick et al. (2019), with subjects in rows and
UniRef90 IDs in columns.
References
Franzosa EA et al. (2019). Gut microbiome structure and
metabolic activity in inflammatory bowel disease. Nature Microbiology 4(2):293-305.
Mallick H, Franzosa EA, McIver LJ, Banerjee S, Sirota-Madi A,
Kostic AD, Clish CB, Vlamakis H, Xavier R, Huttenhower C (2019). Predictive
metabolomic profiling of microbial communities using amplicon or
metagenomic sequences. Nature Communications 10(1):3136-3146.
biobakery/melonnpan documentation built on March 26, 2024, 11:42 p.m.
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| melonnpan.training.data | R Documentation |
Normalized gene family abundances in the PRISM dataset (Franzosa et al., 2019).
Description
Normalized gene family abundance used for MelonnPan training (Mallick et al., 2019).
Usage
data(melonnpan.training.data)
Format
A data frame of normalized gene familty abundances, as described in Mallick et al. (2019), with subjects in rows and UniRef90 IDs in columns.
References
Franzosa EA et al. (2019). Gut microbiome structure and metabolic activity in inflammatory bowel disease. Nature Microbiology 4(2):293-305.
Mallick H, Franzosa EA, McIver LJ, Banerjee S, Sirota-Madi A, Kostic AD, Clish CB, Vlamakis H, Xavier R, Huttenhower C (2019). Predictive metabolomic profiling of microbial communities using amplicon or metagenomic sequences. Nature Communications 10(1):3136-3146.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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