melonnpan.visualize: Visualization of Significant Results.

In biobakery/melonnpan: Model-based Genomically Informed High-dimensional Predictor of Microbial Community Metabolite Profiles

Visualization of Significant Results.

Description

This function produces scatter plots for significantly predicted compounds.

This function produces scatter plots for significantly predicted compounds.

Usage

melonnpan.visualize(
  metab,
  pred,
  cohenCorrelationCutoff,
  Output_file,
  ncol = 2,
  nrow = 2
)

melonnpan.visualize(
  metab,
  pred,
  cohenCorrelationCutoff,
  Output_file,
  ncol = 2,
  nrow = 2
)

Arguments

metab	Measured normalized metabolite relative abundances. Should have same features and samples as pred.
pred	Predicted normalized metabolite relative abundances. Should have same features and samples as metab.
cohenCorrelationCutoff	Correlation threshold for significant prediction. Default is 0.3.
Output_file	Path to the file to write the output.
ncol	Number of columns in batch scatter plot. Default is 2.
nrow	Number of rows in batch scatter plot. Default is 2.

biobakery/melonnpan documentation built on March 26, 2024, 11:42 p.m.