melonnpan.visualize: Visualization of Significant Results.

Description Usage Arguments

View source: R/melonnpan_visualize.R View source: R/melonnpan_summarize.R

Description

This function produces scatter plots for significantly predicted compounds.

This function produces scatter plots for significantly predicted compounds.

Usage

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melonnpan.visualize(
  metab,
  pred,
  cohenCorrelationCutoff,
  Output_file,
  ncol = 2,
  nrow = 2
)

melonnpan.visualize(
  metab,
  pred,
  cohenCorrelationCutoff,
  Output_file,
  ncol = 2,
  nrow = 2
)

Arguments

metab

Measured metabolite relative abundances (normalized to proportional data ranging from 0 to 1.0). Should have same features and samples as pred.

pred

Predicted metabolite relative abundances (normalized to proportional data ranging from 0 to 1.0). Should have same features and samples as metab.

cohenCorrelationCutoff

Correlation threshold for significant prediction. Default is 0.3.

Output_file

Path to the file to write the output.

ncol

Number of columns in batch scatter plot. Default is 2.

nrow

Number of rows in batch scatter plot. Default is 2.


biobakery/melonnpan documentation built on May 17, 2021, 3:27 a.m.