exportComplete.DESeq2: Export complete data and results from DESeq2

In biomics-pasteur-fr/RNADiff: R Tools for RNA-Seq Projects at Institut Pasteur (Biomics Platform)

Description

Export complete data and results from DESeq2

Usage

exportComplete.DESeq2(dds, results, alpha = 0.05, group = NULL,
  cooksCutoff, conds = NULL, versionName = ".", info = NULL,
  export = TRUE)

Arguments

dds	a DESeqDataSet
results	list of results of results(dds,...) with chosen parameters
alpha	threshold to apply to the FDR
group	vector of the condition from which each sample belongs
cooksCutoff	Cook's distance threshold for detecting outliers (Inf to disable the detection, NULL to keep DESeq2 threshold)
conds	biological conditions of the experiment
versionName	versionName of the project
info	data.frame containing information about features
export	FALSE to avoid creating the Excel files (gain of time)

Value

A list of data.frame containing the results of the differential analysis (counts, FC, log2FC, p-value, etc.)

Author(s)

Marie-Agnes Dillies and Hugo Varet

biomics-pasteur-fr/RNADiff documentation built on Aug. 27, 2020, 12:44 a.m.