loadCountData: Load count files
In biomics-pasteur-fr/RNADiff: R Tools for RNA-Seq Projects at Institut Pasteur (Biomics Platform)
Description
Usage
Arguments
Value
Author(s)
View source: R/loadCountData.R
Description
Load count files
Usage
1
2
3
loadCountData(target, rawDir = "raw", skip = 0, sep = "\t",
versionName = "", featuresToRemove = c("alignment_not_unique",
"ambiguous", "no_feature", "not_aligned", "too_low_aQual"))
Arguments
target
target data.frame of the project
rawDir
path to the directory containing the count files
skip
number of lines of the data file to skip before beginning to read data
sep
column separator when reading the count files (tabulation by default)
versionName
versionName of the project
featuresToRemove
vector of features Id to remove from the counts
Value
The matrix of raw counts
Author(s)
Marie-Agnes Dillies and Hugo Varet
biomics-pasteur-fr/RNADiff documentation built on Aug. 27, 2020, 12:44 a.m.
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Description Usage Arguments Value Author(s)
View source: R/loadCountData.R
Description
Load count files
Usage
1 2 3 | loadCountData(target, rawDir = "raw", skip = 0, sep = "\t",
versionName = "", featuresToRemove = c("alignment_not_unique",
"ambiguous", "no_feature", "not_aligned", "too_low_aQual"))
|
Arguments
target |
target |
rawDir |
path to the directory containing the count files |
skip |
number of lines of the data file to skip before beginning to read data |
sep |
column separator when reading the count files (tabulation by default) |
versionName |
versionName of the project |
featuresToRemove |
vector of features Id to remove from the counts |
Value
The matrix of raw counts
Author(s)
Marie-Agnes Dillies and Hugo Varet
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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