volcanoPlotDE: volcano-plot of DE features

In biomics-pasteur-fr/RNADiff: R Tools for RNA-Seq Projects at Institut Pasteur (Biomics Platform)

Description

volcano-plot of DE features

Usage

volcanoPlotDE(complete, pvalCutoff = 0.05, out = TRUE,
  versionName = ".", padjlim = NULL, baseMeanThreshold = 0)

Arguments

complete	list of results from exportComplete() or exportComplete.edgeR()
pvalCutoff	cut-off to apply on each adjusted p-value
out	TRUE to export the figure
versionName	versionName of the project
padjlim	top limit of the plot (and to replace circles by triangles) ('NULL“ by default)
baseMeanThreshold	to display only gene with a baseMean (average expression intensity) higher than 'baseMeanThreshold'

Value

A volcano-plot

Author(s)

Hugo Varet

biomics-pasteur-fr/RNADiff documentation built on Aug. 27, 2020, 12:44 a.m.