plotEvolution: Plots of the expression of some interesting features

In biomics-pasteur-fr/RNADiff: R Tools for RNA-Seq Projects at Institut Pasteur (Biomics Platform)

Description

Plots of the expression of some interesting features

Usage

plotEvolution(mat, features, target, varInt1, varInt2 = NULL,
  colors = c("red", "blue", "black"), plot = c("perGene", "aggregated",
  "both"), ylab = "Expression", out = TRUE, versionName = ".")

Arguments

mat	a matrix containing expression measures
features	a character vector of interesting features
target	the target of the project
varInt1	first variable of interest (displayed on the x-axis)
varInt2	optional second variable of interest (used to colour points)
colors	colors of the plot
plot	"perGene" to plot each gene profile, "aggregated" to average over the features or "both"
ylab	label for the y-axis
out	TRUE to export the figure
versionName	versionName of the project

Value

A plot of the interesting features

Author(s)

Hugo Varet

biomics-pasteur-fr/RNADiff documentation built on Aug. 27, 2020, 12:44 a.m.