| A |
Man page
|
| A,IcaSet-method |
Man page
|
| A<- |
Man page
|
| A<-,IcaSet,data.frame-method |
Man page
|
| A<-,IcaSet-method |
Man page
|
| Afile |
Man page
|
| Afile,MineICAParams-method |
Man page
|
| Afile<- |
Man page
|
| Afile<-,MineICAParams,character-method |
Man page
|
| Afile<-,MineICAParams-method |
Man page
|
| Alist |
Man page
|
| Alist,IcaSet-method |
Man page
|
| IcaSet |
Man page
|
| IcaSet-class |
Man page
|
| MineICAParams |
Man page
|
| S |
Man page
|
| S,IcaSet-method |
Man page
|
| S<- |
Man page
|
| S<-,IcaSet,data.frame-method |
Man page
|
| S<-,IcaSet-method |
Man page
|
| SByGene |
Man page
|
| SByGene,IcaSet-method |
Man page
|
| SByGene<- |
Man page
|
| SByGene<-,IcaSet,data.frame-method |
Man page
|
| SByGene<-,IcaSet-method |
Man page
|
| Sfile |
Man page
|
| Sfile,MineICAParams-method |
Man page
|
| Sfile<- |
Man page
|
| Sfile<-,MineICAParams,character-method |
Man page
|
| Sfile<-,MineICAParams-method |
Man page
|
| Slist |
Man page
|
| Slist,IcaSet-method |
Man page
|
| SlistByGene |
Man page
|
| SlistByGene,IcaSet-method |
Man page
|
| [ |
Man page
Man page
Man page
|
| [,ANY,ANY,ANY,MineICAParams-method |
Man page
|
| [,ANY,ANY,IcaSet-method |
Man page
Man page
|
| [,ANY,ANY,MineICAParams-method |
Man page
|
| [,ANY,MineICAParams-method |
Man page
|
| [,IcaSet,ANY,ANY,ANY-method |
Man page
Man page
|
| [,IcaSet,ANY,ANY-method |
Man page
Man page
|
| [,IcaSet,ANY-method |
Man page
Man page
|
| [,MineICAParams,ANY,ANY,ANY-method |
Man page
|
| [,MineICAParams,ANY,ANY-method |
Man page
|
| [,MineICAParams,ANY-method |
Man page
|
| [<- |
Man page
Man page
Man page
|
| [<-,IcaSet,ANY,ANY,ANY,ANY-method |
Man page
Man page
|
| [<-,IcaSet,ANY,ANY,ANY-method |
Man page
Man page
|
| [<-,IcaSet,ANY,ANY-method |
Man page
Man page
|
| [<-,MineICAParams,ANY,ANY,ANY,ANY-method |
Man page
|
| [<-,MineICAParams,ANY,ANY,ANY-method |
Man page
|
| [<-,MineICAParams,ANY,ANY-method |
Man page
|
| [<-,MineICAparams,ANY-method |
Man page
|
| `addGenesToGoReport` |
Source code
|
| addGenesToGoReport |
Man page
|
| annot2Color |
Man page
|
| annot2col |
Man page
|
| annot2col,MineICAParams-method |
Man page
|
| annot2col<- |
Man page
|
| annot2col<-,MineICAParams,character-method |
Man page
|
| annot2col<-,MineICAParams-method |
Man page
|
| annotCarbayo |
Man page
|
| annotFeatures |
Man page
Source code
|
| annotFeaturesComp |
Man page
Source code
|
| annotFeaturesWithBiomaRt |
Man page
Source code
|
| annotInGene |
Man page
Source code
|
| annotReciprocal |
Man page
|
| annotfile |
Man page
|
| annotfile,MineICAParams-method |
Man page
|
| annotfile<- |
Man page
|
| annotfile<-,MineICAParams,character-method |
Man page
|
| annotfile<-,MineICAParams-method |
Man page
|
| buildIcaSet |
Man page
Source code
|
| buildMineICAParams |
Man page
|
| build_sortHeatmap |
Man page
|
| calcCoord |
Source code
|
| chipManu |
Man page
|
| chipManu,IcaSet-method |
Man page
|
| chipManu<- |
Man page
|
| chipManu<-,IcaSet,character-method |
Man page
|
| chipManu<-,IcaSet-method |
Man page
|
| chipVersion |
Man page
|
| chipVersion,IcaSet-method |
Man page
|
| chipVersion<- |
Man page
|
| chipVersion<-,IcaSet,character-method |
Man page
|
| chipVersion<-,IcaSet-method |
Man page
|
| clScore |
Source code
|
| class-MineICAParams |
Man page
|
| class:IcaSet |
Man page
|
| class:MineICAParams |
Man page
|
| clusVarAnalysis |
Man page
|
| clusterFastICARuns |
Man page
Source code
|
| clusterSamplesByComp |
Man page
|
| clusterSamplesByComp_multiple |
Man page
|
| compNames |
Man page
Man page
|
| compNames,IcaSet-method |
Man page
|
| compNames<- |
Man page
Man page
|
| compNames<-,IcaSet,character-method |
Man page
|
| compNames<-,IcaSet-method |
Man page
|
| compareAn |
Man page
|
| compareAn2graphfile |
Man page
|
| compareGenes |
Man page
Source code
|
| cor2An |
Man page
|
| correl2Comp |
Man page
|
| dat |
Man page
Man page
|
| dat,IcaSet-method |
Man page
Man page
|
| dat<- |
Man page
Man page
|
| dat<-,IcaSet,matrix-method |
Man page
Man page
|
| dat<-,IcaSet-method |
Man page
|
| datByGene |
Man page
|
| datByGene,IcaSet-method |
Man page
|
| datByGene<- |
Man page
|
| datByGene<-,IcaSet,matrix-method |
Man page
|
| datByGene<-,IcaSet-method |
Man page
|
| dataCarbayo |
Man page
|
| datfile |
Man page
|
| datfile,MineICAParams-method |
Man page
|
| datfile<- |
Man page
|
| datfile<-,MineICAParams,character-method |
Man page
|
| datfile<-,MineICAParams-method |
Man page
|
| doEnrichment |
Man page
|
| geneNames |
Man page
|
| geneNames,IcaSet-method |
Man page
|
| genesPath |
Man page
|
| genesPath,MineICAParams-method |
Man page
|
| genesPath<- |
Man page
|
| genesPath<-,ANY-method |
Man page
|
| genesPath<-,MineICAParams,character-method |
Man page
|
| getA |
Man page
|
| getA,IcaSet-method |
Man page
|
| getAfile |
Man page
|
| getAnnot2col |
Man page
|
| getAnnotfile |
Man page
|
| getChipManu,IcaSet-method |
Man page
|
| getComp |
Man page
|
| getComp,IcaSet,character,numeric |
Man page
|
| getComp,IcaSet,character,numeric-method |
Man page
|
| getComp,IcaSet-method |
Man page
|
| getGenesPath |
Man page
|
| getIndComp |
Man page
|
| getIndComp,IcaSet-method |
Man page
|
| getLabelsComp |
Man page
|
| getLabelsComp,IcaSet-method |
Man page
|
| getMart,IcaSet-method |
Man page
|
| getProj |
Man page
Source code
|
| getPvalCutoff |
Man page
|
| getRefSamples,IcaSet-method |
Man page
|
| getResPath |
Man page
|
| getS |
Man page
|
| getS,IcaSet-method |
Man page
|
| getSByGene |
Man page
|
| getSByGene,IcaSet-method |
Man page
|
| getSdExpr |
Man page
|
| getSelCutoff |
Man page
|
| getSfile |
Man page
|
| getTypeID,IcaSet-method |
Man page
|
| getWitGenes |
Man page
|
| getWitGenes,IcaSet-method |
Man page
|
| getdatfile |
Man page
|
| hgOver |
Man page
|
| hypergeoAn |
Man page
|
| icaSetCarbayo |
Man page
|
| icaSetKim |
Man page
|
| icaSetRiester |
Man page
|
| icaSetStransky |
Man page
|
| indComp |
Man page
Man page
|
| indComp,IcaSet-method |
Man page
|
| indComp<- |
Man page
Man page
|
| indComp<-,IcaSet,character-method |
Man page
|
| indComp<-,IcaSet-method |
Man page
|
| mart |
Man page
|
| mart,IcaSet-method |
Man page
|
| mart<- |
Man page
|
| mart<-,IcaSet,character-method |
Man page
|
| mart<-,IcaSet-method |
Man page
|
| mergeGostatsResults |
Man page
|
| nbComp |
Man page
|
| nbComp,IcaSet-method |
Man page
|
| nbOccByGeneInComp |
Man page
Source code
|
| nbOccInComp |
Man page
Source code
|
| nbOccInComp_simple |
Man page
Source code
|
| nodeAttrs |
Man page
Source code
|
| organism |
Man page
|
| organism,IcaSet-method |
Man page
|
| organism<- |
Man page
|
| organism<-,IcaSet-method |
Man page
|
| plotAllMix |
Man page
|
| plotCorGraph |
Man page
Source code
|
| plotDens2classInComp_plotOnly |
Man page
|
| plotDensAllAnnotInAllComp |
Man page
|
| plotDensOneAnnotInAllComp |
Man page
|
| plotMclust |
Man page
|
| plotMix |
Man page
|
| plotPosAnnotInComp |
Man page
Source code
|
| plotPosOneAnnotInComp_ggplot |
Man page
Source code
|
| plotPosOneAnnotLevInComp_ggplot |
Man page
Source code
|
| plotPosSamplesInComp |
Man page
|
| plotPosSamplesInComp_ggplot |
Source code
|
| plot_heatmapsOnSel |
Man page
|
| pvalCutoff |
Man page
|
| pvalCutoff,MineICAParams-method |
Man page
|
| pvalCutoff<- |
Man page
|
| pvalCutoff<-,MineICAParams,numeric-method |
Man page
|
| pvalCutoff<-,MineICAParams-method |
Man page
|
| qualVarAnalysis |
Man page
Source code
|
| quantVarAnalysis |
Man page
Source code
|
| readA |
Man page
|
| readS |
Man page
|
| refSamples |
Man page
|
| refSamples,IcaSet-method |
Man page
|
| refSamples<- |
Man page
|
| refSamples<-,IcaSet,character-method |
Man page
|
| refSamples<-,IcaSet-method |
Man page
|
| relativePath |
Man page
Source code
|
| resPath |
Man page
|
| resPath,MineICAParams-method |
Man page
|
| resPath<- |
Man page
|
| resPath<-,ANY-method |
Man page
|
| resPath<-,MineICAParams,character-method |
Man page
|
| runAn |
Man page
Source code
|
| runCompareIcaSets |
Man page
Source code
|
| runEnrich |
Man page
Source code
|
| runICA |
Man page
Source code
|
| sampleNames<- |
Man page
|
| sampleNames<-,IcaSet-method |
Man page
|
| selCutoff |
Man page
|
| selCutoff,MineICAParams-method |
Man page
|
| selCutoff<- |
Man page
|
| selCutoff<-,MineICAParams,numeric-method |
Man page
|
| selCutoff<-,MineICAParams-method |
Man page
|
| selectContrib |
Man page
|
| selectContrib,IcaSet,numeric,character-method |
Man page
|
| selectContrib,IcaSet-method |
Man page
|
| selectContrib,list,numeric,ANY |
Man page
|
| selectContrib,list,numeric,ANY-method |
Man page
|
| selectFeatures_IQR |
Man page
Source code
|
| selectWitnessGenes |
Man page
Source code
|
| setA,IcaSet-method |
Man page
|
| setA<- |
Man page
|
| setAfile |
Man page
|
| setAnnot2col |
Man page
|
| setAnnotfile |
Man page
|
| setChipManu,IcaSet-method |
Man page
|
| setGenesPath |
Man page
|
| setIndComp |
Man page
|
| setIndComp,IcaSet-method |
Man page
|
| setLabelsComp |
Man page
|
| setLabelsComp,IcaSet-method |
Man page
|
| setMart,IcaSet-method |
Man page
|
| setPvalCutoff |
Man page
|
| setRefSamples,IcaSet-method |
Man page
|
| setResPath |
Man page
|
| setS,IcaSet-method |
Man page
|
| setS<- |
Man page
|
| setSByGene,IcaSet-method |
Man page
|
| setSByGene<- |
Man page
|
| setSelCutoff |
Man page
|
| setSfile |
Man page
|
| setTypeID,IcaSet-method |
Man page
|
| setWitGenes |
Man page
|
| setWitGenes,IcaSet-method |
Man page
|
| setdatfile |
Man page
|
| subIcaSet |
Source code
|
| typeID |
Man page
|
| typeID,IcaSet-method |
Man page
|
| typeID<- |
Man page
|
| typeID<-,IcaSet,list-method |
Man page
|
| typeID<-,IcaSet-method |
Man page
|
| validIcaSet |
Source code
|
| wilcoxOrKruskalOnA |
Man page
|
| witGenes |
Man page
Man page
|
| witGenes,IcaSet-method |
Man page
|
| witGenes<- |
Man page
Man page
|
| witGenes<-,IcaSet,character-method |
Man page
|
| witGenes<-,IcaSet-method |
Man page
|
| writeGenes |
Man page
|
| writeGostatsHtmltable |
Man page
Source code
|
| writeHtmlResTestsByAnnot |
Man page
Source code
|
| writeProjByComp |
Man page
Source code
|
| writeRnkFiles |
Man page
Source code
|
