Files in bitona/MineICA

Analysis of an ICA decomposition obtained on genomics data

R/AllClasses.R R/AllGeneric.R R/compareAnalysis.R R/compareGenes.R R/functions.R R/functions_comp2annot.R R/functions_comp2annottests.R R/functions_enrich.R R/heatmap.plus.R R/heatmapsOnSel.R R/methods-IcaSet.R R/methods-MineICAParams.R R/runAn.R man/A.Rd man/Alist.Rd man/Slist.Rd man/addGenesToGoReport.Rd man/annot2Color.Rd man/annotCarbayo.Rd man/annotFeatures.Rd man/annotFeaturesComp.Rd man/annotFeaturesWithBiomaRt.Rd man/annotInGene.Rd man/annotReciprocal.Rd man/buildIcaSet.Rd man/buildMineICAParams.Rd man/build_sortHeatmap.Rd man/class-IcaSet.Rd man/class-MineICAParams.Rd man/clusVarAnalysis.Rd man/clusterFastICARuns.Rd man/clusterSamplesByComp.Rd man/clusterSamplesByComp_multiple.Rd man/compareAn.Rd man/compareAn2graphfile.Rd man/compareGenes.Rd man/cor2An.Rd man/correl2Comp.Rd man/dat.Rd man/dataCarbayo.Rd man/doEnrichment.Rd man/getComp.Rd man/getProj.Rd man/getSdExpr.Rd man/hgOver.Rd man/hypergeoAn.Rd man/icaSetCarbayo.Rd man/icaSetKim.Rd man/icaSetRiester.Rd man/icaSetStransky.Rd man/indComp.Rd man/mergeGostatsResults.Rd man/nbOccByGeneInComp.Rd man/nbOccInComp.Rd man/nbOccInComp_simple.Rd man/nodeAttrs.Rd man/plotAllMix.Rd man/plotCorGraph.Rd man/plotDens2classInComp_plotOnly.Rd man/plotDensAllAnnotInAllComp.Rd man/plotDensOneAnnotInAllComp.Rd man/plotMclust.Rd man/plotMix.Rd man/plotPosAnnotInComp.Rd man/plotPosOneAnnotInComp_ggplot.Rd man/plotPosOneAnnotLevInComp_ggplot.Rd man/plotPosSamplesInComp.Rd man/plot_heatmapsOnSel.Rd man/qualVarAnalysis.Rd man/quantVarAnalysis.Rd man/readA.Rd man/readS.Rd man/relativePath.Rd man/runAn.Rd man/runCompareIcaSets.Rd man/runEnrich.Rd man/runICA.Rd man/selectContrib.Rd man/selectFeatures_IQR.Rd man/selectWitnessGenes.Rd man/wilcoxOrKruskalOnA.Rd man/writeGenes.Rd man/writeGostatsHtmltable.Rd man/writeHtmlResTestsByAnnot.Rd man/writeProjByComp.Rd man/writeRnkFiles.Rd vignettes/images/2_orderedByContrib_zval3.pdf vignettes/images/2_withDendro_zval3.pdf