Correlation_perturbation | R Documentation |
Correlation_perturbation(distri_diff, cutoff = 0.9, gene = "all", plot = FALSE, plot_path = "./correlation_network.pdf", output = FALSE, file_path = "./correlation_perturbation.txt")
distri_diff |
A dataframe . This dataframe can be obtained by the function "Get_distri_diff()" in this package. |
cutoff |
The cutoff of correlation which will be used to plot the network graph. The default is 0.9. |
gene |
A character or vector. The perturbation choosed to plot the network graph. The default is "all" which means plot all perturbations. |
plot |
FALSE by default. If it is TRUE, then plot the network graph based on the perturbation correlation. |
plot_path |
The save path of the graph you plot. It works only when the parameter "plot" is TRUE. |
output |
FALSE by default. If it is TRUE, then the result will be outputted to a file. |
file_path |
The save path of the result. It works only when the parameter "output" is TRUE. |
A dataframe showing the perturbation correlation.
Bin Duan
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